Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1540 ATGAATATTCTTTCAATCGCTTCTCTTTGTTTGAGAAAAGATCTATATGCAGAATTATGGAAGCTATGTGCTGGACCTTTGATCGATATCCCCCAAGCAGGGGAGAGAGTTTTATACTTCCCACAGGGTCATGTGGAGCAAGTAGAATTCTTGACAAATCAAGAACTTGACCAGGGAGGTCCTCACTATAATATTCCCTCTGAGATTCTTTGTCAAGTTTTAAACATTCAGCTTTTGGCTGAACCAGAAACTGATGAAATATATGCAAGCATCACTCTGATGCCTGACTTCCAAAGCGATCCAACAGTTCCAGACCCAACCGTTCCTGAAACCCATAATCAGGAAGTGGACTCATTCTGCAAGATATTAACAGCCTCTGATGCTAGCACACATGGAGGAGTTTTAGTTCTGCAGAAGCATGCTGATAAGTGCCTTCCTCAGCTGGACATGACTAAAAGAACTCCTACTCAGGAGTTGGTTGCTAAAGATCTACATGGGTTTGAATGGAAATTCAGACATATGTATAGAGATCAAACAAAGACACATCTTCTTACAACTGGGTGGAGCAACTTTGTCTCTTCCAAAAATTTGAATGCAGGGGATGCCTTTCTGTTCTTGAGGGGACCAAATGATGATGAACTATGGTGTGGTGTTAAGCATCTAACAAGGCAACGAAGTCCTAGTCATTCATCTTTAATGTCAAGGCAATGCATGCAACAAGTTCTTTCAACTGCTTCACATGCTGTAATGACTGGCACTATGTTTACAGTCTTTTACAAGCCAAGGATTAGCCAGTTCATTGTTCGCTTGAACAAATATCTGGAGGCAACAACCAATAATTTTCAAGTTGGCACACAGTTCAAGATGAGATTGGAGGGAGAAGACTCACTTGAGATTATAAGGTTCTCAGGTACTATTGTTGATGTTGGGGATTTCTCTCCAGCGTGGCCATTGTCTAAATGGAAGTCATTTCAGGTTCAATGGGATGAACCTGCGACGATTGCAAGGCCTGAGAGGGTGTCCCCTTGGGAGATTGAGCCTCTTGCGCCCTCTGCTTCTGCAAAAAAGTCTCTTTCAATAACAGTCAAGAACAAAAGTGTTAGGCCTGCTAATATCCCATCTTCTGGAGCTACTCCCAGCTCAACTACTTCTCCTCCATCAAACATCAATAATAGCTCGAGAATGAGGGTGGATGGAATAAGGCCAAATTCTCCATTGTTGCATGCTTCTTCAAGCTTTTCTTATGAGCCAAGAATCGACGGAGCTAGTTCATCATCACAGGCTTCTGTCTCTGGTCATGCTCATGTTTCATGGAGGCTTAACCATGGCCAATATGGTCAAGTTGAAGATGAGGAGAAAAGTGGGAATTCCAAGAATATCTAG 1383 0.4244 MNILSIASLCLRKDLYAELWKLCAGPLIDIPQAGERVLYFPQGHVEQVEFLTNQELDQGGPHYNIPSEILCQVLNIQLLAEPETDEIYASITLMPDFQSDPTVPDPTVPETHNQEVDSFCKILTASDASTHGGVLVLQKHADKCLPQLDMTKRTPTQELVAKDLHGFEWKFRHMYRDQTKTHLLTTGWSNFVSSKNLNAGDAFLFLRGPNDDELWCGVKHLTRQRSPSHSSLMSRQCMQQVLSTASHAVMTGTMFTVFYKPRISQFIVRLNKYLEATTNNFQVGTQFKMRLEGEDSLEIIRFSGTIVDVGDFSPAWPLSKWKSFQVQWDEPATIARPERVSPWEIEPLAPSASAKKSLSITVKNKSVRPANIPSSGATPSSTTSPPSNINNSSRMRVDGIRPNSPLLHASSSFSYEPRIDGASSSSQASVSGHAHVSWRLNHGQYGQVEDEEKSGNSKNI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1540 460 Gene3D - 280 354 - -
Mibi01g1540 460 SMART B3_2 119 219 IPR003340 GO:0003677
Mibi01g1540 460 MobiDBLite consensus disorder prediction 365 403 - -
Mibi01g1540 460 SUPERFAMILY DNA-binding pseudobarrel domain 108 233 IPR015300 -
Mibi01g1540 460 MobiDBLite consensus disorder prediction 365 398 - -
Mibi01g1540 460 MobiDBLite consensus disorder prediction 445 460 - -
Mibi01g1540 460 CDD B3_DNA 118 218 IPR003340 GO:0003677
Mibi01g1540 460 FunFam Auxin response factor 117 222 - -
Mibi01g1540 460 Gene3D - 116 221 IPR015300 -
Mibi01g1540 460 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 388 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi01g1540 460 Pfam B3 DNA binding domain 119 217 IPR003340 GO:0003677
Mibi01g1540 460 ProSiteProfiles B3 DNA-binding domain profile. 119 222 IPR003340 GO:0003677
Mibi01g1540 460 Pfam Auxin response factor 245 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi01g1540 460 FunFam Auxin response factor 280 352 - -
Mibi01g1540 460 MobiDBLite consensus disorder prediction 441 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1540 Mibi-ChrMibi01 21708306 21711791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1540 14 369 B3 DNA Binding Superfamily AT2G46530 58.496 4.83e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi01g1540 B3 1.1e-17 CL0405