Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1463 ATGCAGAGGAAAAAGAAGAAGAACAATGATAGCAAGATCTGTCCGATATGCAAAAGGTGCTTCGCTAATGGAAAAGCTGTGGGAGGTCATATGAGGTCTCACCTTGCCAAACTTCCGATCCCTCCCAAGCCTGCTCCTATAACTCCACCAATCGATCACACACCTTTAGAAATATCCAAAGTTGATGTTGATAGTGGTTCCTCAACTCATAAGCGTTTGATCTCATTTTCTTCAGCAAAATGCCATTTGATGAAGAAATTGCCTGTTGAACAAAACTTTCATCCCATGGATCGAGACTTAGCAGCAAGGGTTTTGAACCCCATCGATGAACAAGGAAGTGAATCAGATCAATCTTACATGACTAGAAAGAGATCTAAACATTTCCATAAAATTGATGATGCAACTATAAAAGTAATGCTGCCGCCTAAGACAAAAGTTGATGAACACAATCCAAAACAAACAGGTTCGTTCTTTGATTCTTTCTTTCCCATTATAAACGCTGCTTTGACTCTCATATCACTTTCCAAGGAGAAATGGGCCGAAGGCGAAGAATTGATCAATAAGAAACAAAAAGTGAATGAACAAGAATACTCATATGTGGAGGTTGAGTCTCATGGCCGAAGGTTTGAGTGTGAGATGTGCAAGAAAGTTTTTGGATCTCCCCAGGCCCTTGGTAAACACAAGGCGAGCCACAAAATGTTCACGAAGAATGATCGATTGGAGGTAGATGGTGAATTTAATGAAGAAAATTGGAATGGTGATGTTGTTAAGGATCCAAAAGTGTTCAAGTGCCCCCACTGCTCCAAAGTGCTTGGGTCTAGCCAAGGACTTGGAAGACACAAGAAGATACACTTCCCCAATGCTATGAAATTTGGCCAATGA 882 0.4093 MQRKKKKNNDSKICPICKRCFANGKAVGGHMRSHLAKLPIPPKPAPITPPIDHTPLEISKVDVDSGSSTHKRLISFSSAKCHLMKKLPVEQNFHPMDRDLAARVLNPIDEQGSESDQSYMTRKRSKHFHKIDDATIKVMLPPKTKVDEHNPKQTGSFFDSFFPIINAALTLISLSKEKWAEGEELINKKQKVNEQEYSYVEVESHGRRFECEMCKKVFGSPQALGKHKASHKMFTKNDRLEVDGEFNEENWNGDVVKDPKVFKCPHCSKVLGSSQGLGRHKKIHFPNAMKFGQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1463 293 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Mibi01g1463 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 284 IPR013087 -
Mibi01g1463 293 Pfam C2H2-type zinc finger 208 232 - -
Mibi01g1463 293 Pfam C2H2-type zinc finger 13 36 - -
Mibi01g1463 293 Pfam C2H2-type zinc finger 261 284 - -
Mibi01g1463 293 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Mibi01g1463 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 231 IPR013087 -
Mibi01g1463 293 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Mibi01g1463 293 SUPERFAMILY beta-beta-alpha zinc fingers 207 284 IPR036236 -
Mibi01g1463 293 SMART c2h2final6 12 34 IPR013087 -
Mibi01g1463 293 SMART c2h2final6 209 231 IPR013087 -
Mibi01g1463 293 SMART c2h2final6 262 284 IPR013087 -
Mibi01g1463 293 Gene3D Classic Zinc Finger 183 286 - -
Mibi01g1463 293 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 11 286 IPR044303 GO:0006355
Mibi01g1463 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1463 Mibi-ChrMibi01 19804738 19805619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1463 10 293 C2H2 Transcription Factor Family AT3G60580 27.575 8.90e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g1463 zf-C2H2_6 2.7e-08 CL0361