LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1395	ATGAAACTGAGACGCTCATCAGGAATATTTAGAGGAGAAGAGGAAGATGGAGAGAGAGATGAGTTTAGGGGAGGGACATACATAAAGAAGGGACCTTGGAGTGCTGAAGAAGATGAAACTCTGATGAAACATGTCAAGAAAAATGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGTTTGCTTCCCCGGACCGGAAAATCTTGCCGGCTCCGGTGGGTTAACAAGCTTAGACCCAACCTGAAGACGGGGTGCAAGTTTTCAGCAGAGGAAGAAAGAGTGGTGATAGAATTGCAGGCACAGTTTGGGAACAAGTGGGCCAAAATAGCAACTTACTTGGAAGGAAGAACAGACAATGATGTGAAAAATTTCTGGAGTAGCAGGAGAAAGAGGCTGGAGAGAATGTTGCAGAAACCATCTCCTCCATCATCATCAAAGCAAAACAGTAAAAACAAAGCAACATCTCACCATATTCATCAGCCAGTACAAGTAGTTGAAGAGGTTCCTGCTTCATGCAATTCAAAGCCATCAGACAATGATAAGATTCAGAATGTTGAAATGAAAGCAGTGGAGGATACCCCACTTAACATGGTTTCTTTATTTGAGTCTTCTTCATCAGACTTTACTTTTGCTCAAGTAATTGTTCCTGATGAGTGCAACCACCAAGTGAACTATGACCTATTGCCCACGCCGGTCTGCCATGGCCTGCTCGAACCGGAGCCTTTTGATGATGCTATATTTCTTGAAGTTTTTGAGCAGGACAAGAAGCCAGGTGTTGCAGGAATTTCTCAGACTTCAATCCCAGGAAACGCCTTCTTTGAGGACTTCCCAAGTGACATATTTGACTATTTTGAAGACCTTCCTAACTCACTGGACAAATGA	882	0.4365	MKLRRSSGIFRGEEEDGERDEFRGGTYIKKGPWSAEEDETLMKHVKKNGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQAQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERMLQKPSPPSSSKQNSKNKATSHHIHQPVQVVEEVPASCNSKPSDNDKIQNVEMKAVEDTPLNMVSLFESSSSDFTFAQVIVPDECNHQVNYDLLPTPVCHGLLEPEPFDDAIFLEVFEQDKKPGVAGISQTSIPGNAFFEDFPSDIFDYFEDLPNSLDK	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1395	293	CDD	SANT	86	125	IPR001005	-
	Mibi01g1395	293	ProSiteProfiles	Myb-like domain profile.	86	129	IPR001005	-
	Mibi01g1395	293	FunFam	MYB transcription factor	30	82	-	-
	Mibi01g1395	293	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	28	81	IPR017930	-
	Mibi01g1395	293	SUPERFAMILY	Homeodomain-like	28	125	IPR009057	-
	Mibi01g1395	293	MobiDBLite	consensus disorder prediction	1	25	-	-
	Mibi01g1395	293	Gene3D	-	85	160	-	-
	Mibi01g1395	293	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	82	133	IPR017930	-
	Mibi01g1395	293	Gene3D	-	29	82	-	-
	Mibi01g1395	293	PANTHER	TRANSCRIPTION FACTOR DUO1	24	290	-	-
	Mibi01g1395	293	SMART	sant	29	79	IPR001005	-
	Mibi01g1395	293	SMART	sant	83	131	IPR001005	-
	Mibi01g1395	293	FunFam	Transcription factor GAMYB	85	157	-	-
	Mibi01g1395	293	MobiDBLite	consensus disorder prediction	132	157	-	-
	Mibi01g1395	293	MobiDBLite	consensus disorder prediction	138	157	-	-
	Mibi01g1395	293	CDD	SANT	32	77	IPR001005	-
	Mibi01g1395	293	ProSiteProfiles	Myb-like domain profile.	25	77	IPR001005	-
	Mibi01g1395	293	Pfam	Myb-like DNA-binding domain	86	126	IPR001005	-
	Mibi01g1395	293	Pfam	Myb-like DNA-binding domain	30	75	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1395	Mibi-ChrMibi01	18334481	18335743	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1395	28	289	MYB Transcription Factor Family	AT3G60460	45.329	4.01e-66	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi01g1395		Myb_DNA-binding	8.8e-12	CL0123