LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1324	ATGTATGTGTACGGTTTTCGTAATAAACACCATCTGTCTGGTCGTTTGTGTTGGTGTGAAGCTTTTGGCAGTGGTTACGTAATACTACTGCAAGAGATGAGTCAGATGATACTTGATGTAGAAGATGGAGAGCTCCCCAGTGGTCAGAATGCACCACAGTTGAATGATGAGGGCAATGGAGGAAGTGACAGTGGGTTAATTCTGAAGAAAGGTCCATGGACATCTGCTGAAGATGCTATTTTGGTGGACTATGTTAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGTCTGTCCCGATGCGGAAAAAGCTGCCGACTGCGGTGGGCAAATCACCTAAGGCCAAATTTAAAGAAAGGAGCTTTTACTGCTGAAGAAGAGCAGTTGATTGCTGAACTCCATGCTAGGTTGGGAAATAAATGGGCACGCATGGCTGCGCATCTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAATACTCGTATAAAGAGGCGACAGCGGGCTGGCTTGCCTCTATATCCTCCTGAAGTGTGTTTACCAGAATCAAAAGAGAGTCAACTAGGCCGAAGCGCTGCTGGGAAAATGGGAGATAGAGGACATACTGAATTTTCGCAGGAAAACAGTTATCAGAAACATGATACTCTTTTTGACAGTCTGAATGTAAATCTGGGAGGCTTTCCTTATGTGCCAGCTATTCCTGATATTTCTGCCAATAACATTCTGCTGAAAGGTCTCGGTTCTTCCCAGCATTGCAATTATTTTCCTTCAAGGGTACCTTACCATAGGCCCTTTCACGATTCAACAATGCCATTTCCTCGTTCATCTGAGTTGACCAGAAATGGGTTTTATCCTTTACACCATATCAAGGATTATACTTATAATAATATTGCACAATCATTTGGATACGATTCTCCCCTTGATCCTGGTCCCTCCTCACAGAACTCGCTGTGTAGCAGCCATTCACTTCCAAATGGCAAACCCTCTACTTCTAAGCCAACCATTGAGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGCAGATGGGGTACATCTCCGCTTCCTTTGCTTGAATCAGTTGATGCCCTCACAGGTATTCCCCTGCCAACTAGTTTACAGGAGTCAGATCCTTCTTTACCACATAACAGTGGCCTTCTGGATGCTTTAATTCATCAGTCCAATAATCTGAGCAGCTCAAAGAACCATTGTTCTGACAAGAGTTCAAATTCATCTATTGCTGCCCCTGGTGATAGAGCCGACAGTTCCACTTTATATGTGTATGAGACAGAATGTGAAGACTATGCAGACTGTGTTTCTACATTTGGTGCAACTTCAATATTGAATGAGTGTTTTGCTGTTAACGCCAACGGAAACTCATTTGATGAACAGCAACCTGCAAAGACCTTAAATGAAAACTCTCTGAAATCAGAATCTGCTTACCAGGCTTTGACCCCCACCAGCGAAGATCAAGGCATGTCAATGTTGGATATGCCCCAACCAGATGTTTTACTTGCTTCGGATTGGTATGAGCTAGGCCCTGAATTTTCGAAGAACCATGTCGAAATGAGCAATTCCATAGCAACCCTTGTCGGTGGTGATGATTTAGCCACTGACTACAAGTACATATCTGCGGAAGTCTCATCACCAAGTCAAGTATGGGGTTTGGATTCTTGCACCTGGAATAACATGCCTGCTGTTTGCCAAATGTCTGACCTTCCATAA	1755	0.441	MYVYGFRNKHHLSGRLCWCEAFGSGYVILLQEMSQMILDVEDGELPSGQNAPQLNDEGNGGSDSGLILKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIAELHARLGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLPESKESQLGRSAAGKMGDRGHTEFSQENSYQKHDTLFDSLNVNLGGFPYVPAIPDISANNILLKGLGSSQHCNYFPSRVPYHRPFHDSTMPFPRSSELTRNGFYPLHHIKDYTYNNIAQSFGYDSPLDPGPSSQNSLCSSHSLPNGKPSTSKPTIEAVKLELPSLQYPETDLGRWGTSPLPLLESVDALTGIPLPTSLQESDPSLPHNSGLLDALIHQSNNLSSSKNHCSDKSSNSSIAAPGDRADSSTLYVYETECEDYADCVSTFGATSILNECFAVNANGNSFDEQQPAKTLNENSLKSESAYQALTPTSEDQGMSMLDMPQPDVLLASDWYELGPEFSKNHVEMSNSIATLVGGDDLATDYKYISAEVSSPSQVWGLDSCTWNNMPAVCQMSDLP	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1324	584	Gene3D	-	69	122	-	-
	Mibi01g1324	584	MobiDBLite	consensus disorder prediction	408	428	-	-
	Mibi01g1324	584	CDD	SANT	125	166	IPR001005	-
	Mibi01g1324	584	SMART	sant	69	119	IPR001005	-
	Mibi01g1324	584	SMART	sant	122	170	IPR001005	-
	Mibi01g1324	584	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	118	172	IPR017930	-
	Mibi01g1324	584	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	68	117	IPR017930	-
	Mibi01g1324	584	MobiDBLite	consensus disorder prediction	408	430	-	-
	Mibi01g1324	584	Gene3D	-	125	171	-	-
	Mibi01g1324	584	SUPERFAMILY	Homeodomain-like	69	164	IPR009057	-
	Mibi01g1324	584	Pfam	Myb-like DNA-binding domain	123	166	IPR001005	-
	Mibi01g1324	584	Pfam	Myb-like DNA-binding domain	70	117	IPR001005	-
	Mibi01g1324	584	FunFam	Transcription factor GAMYB	125	171	-	-
	Mibi01g1324	584	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	56	556	-	-
	Mibi01g1324	584	MobiDBLite	consensus disorder prediction	310	337	-	-
	Mibi01g1324	584	ProSiteProfiles	Myb-like domain profile.	118	168	IPR001005	-
	Mibi01g1324	584	CDD	SANT	72	117	IPR001005	-
	Mibi01g1324	584	FunFam	MYB-related transcription factor	69	122	-	-
	Mibi01g1324	584	ProSiteProfiles	Myb-like domain profile.	68	117	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1324	Mibi-ChrMibi01	17241893	17245460	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1324	65	584	MYB Transcription Factor Family	AT5G06100	41.431	2.95e-114	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi01g1324		Myb_DNA-binding	5.5e-15	CL0123