Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1296 ATGAGTTTTCTGCAATTCACAGACGCCATGAACGCATCGGAGCTTCAAGTATGGGACAATGCCGCCTTCGACAGTGACGAAGTCACCATGAAAGCTTCATGGTCGTCGAGTCTCGATCCTGTGTTCGAGAATTCTTCTGAATCTCTGGATTCTGATCACGGTAAGGAAAATCTTAGCCCTGAAATGGTGAATTCCTCTGTTTCTGTGAAATCTTCGGTCGCATTTAAGCCACTTCAGTCGAACGGTGTTCTCGGAAACTCACAACAGAGGAAAACCTCGAAGGTTTTCTCGAAGAAGAAGAAGACGAGTGAGCAAGACAATGAGAGAAAAATCGACGATGAGATCGAAGAAATCGAGAACGAGATTAAGCGATTGTCGTCTAGATTGGAGGCTCTTCGACTTGAGAAGGCGGAACAGATCGCGAAATTGACGGTTGAAAAGCGAGGGAGAGTTGTGCCTGCGAAATTCATGGAAGGAAAACAGAGTGTGAAGAAGATCGAAGAGACTCCTTTAAGTGCGAAGTCGAAGGTTAATCGGAGGGGTATGAGTTTAGGGCCATCGGAGATTTTTGCCGAATCGAAGTTACGGCCGCCGGGGAAGGTGGAAACGACACCGTTTCCGGTGACACAAATTGTGAAGAAGATTGAAGGGACTCCCTTAAGTGCGAAATCGAAGTTTAATCGGAGGGGAATGAGTTTGGGGCCGTCGGAGATATTCGCGACGGCGAGATTCCGGCCGCCGGGGAAGATGGAAACGACGCCTGCTACGGCGGCGCAGAGTCGCCGGAAATCGTGCTTCTTGAAAATTCAAGATATCGAGGAAGCAAAATCGATGATGAGTGAAAGAAGGAAGAGTATGACTGTTAGTCCGAAGTCACGAAAGAATGTGAGTAGGATTGAGTCTCAGAAGCAAGCAGTGACTACCACAGCGGGAGGGAAAAAGATTGTGAAGAAAGAATGTCCATTGATTCAGCCAAGAAAACTTTTCAAAGATGGTGAAAAGGAAAAATCAGTATCCACAAAGAAGCCATTGAAGCCTGGACGAGTGATAGCAAGCAGGTACAACATGGGTTCTAGTAATCAGTCATTTGTGACGTCCATTGAAGCAGCTAGGAAGAGGTCGTTGCCTGAGAATGAGAAGGAAGAAGGTGGGAAGAAGGCACGAGGGAGTGGAGGAATCACAGAGGGAGGGAAGACGAAGAAGAGGTGGGAGATTCCACCTGAGATTGTGCTTTACAAGAGGAAGGATGGAGAAAAAGAGGGAGAAGAAGAAAAGGAGAAGGAGAAGACATTGTTGATGACAGGTTTGCTTCCAAAGATAAAAACAACTCGATTTGTTGATGAGAGTCCAAGAGGGTCAGGACCTGCAAAAAGAGTGGCTGACTTGAAGGGCAAGAAGAAATCCTATTTTTGCCCATATAATGAGGATGTTGATGAAGGAGAAGGAGAAGAAGGGGTTGTTGGTGGATCTGCTGCTTGTGGGGCTCTGAGTTTTGCAGAAGAGGAAAGTGATAATAATGATGAAGCTTCTGGTTCTCTGTCTGCTCCAACCATGGCTACAGCTAGAACTGTCAAGGATGTCTCGCCCCACGAGTTCGTGAAGGCTTATTCTGCTCATCTCAAGCGATCTGGCAAGATGGAGCTTCCCGAGTGGACAGATATTGTGAAGACTGCAAGATTCAAGGAGTTGGCTCCATATGATCCTGATTGGTACTATGTTAGGGCTGCCTCCATGGCTAGGAAGATCTACTTGAGAGGGGGTCTTGGTGTTGGTTCTTTCCAGCGTATTTATGGTGGGAGCAAGAGGAATGGTAGCCGCCCTCCTCATTTCTGCAAGAGCAGTGGTGCTATTGCCCGCCACATTCTTCAACAGTTGCAGACCATGAACATCATTGAAATTGACACCAAGGGTGGCAGGAAAATCACTTCAAATGGTCAGAGGGATCTTGACCAAGTGGCTGGTAGGATTGTGGTGGCTCCTTGA 1983 0.472 MSFLQFTDAMNASELQVWDNAAFDSDEVTMKASWSSSLDPVFENSSESLDSDHGKENLSPEMVNSSVSVKSSVAFKPLQSNGVLGNSQQRKTSKVFSKKKKTSEQDNERKIDDEIEEIENEIKRLSSRLEALRLEKAEQIAKLTVEKRGRVVPAKFMEGKQSVKKIEETPLSAKSKVNRRGMSLGPSEIFAESKLRPPGKVETTPFPVTQIVKKIEGTPLSAKSKFNRRGMSLGPSEIFATARFRPPGKMETTPATAAQSRRKSCFLKIQDIEEAKSMMSERRKSMTVSPKSRKNVSRIESQKQAVTTTAGGKKIVKKECPLIQPRKLFKDGEKEKSVSTKKPLKPGRVIASRYNMGSSNQSFVTSIEAARKRSLPENEKEEGGKKARGSGGITEGGKTKKRWEIPPEIVLYKRKDGEKEGEEEKEKEKTLLMTGLLPKIKTTRFVDESPRGSGPAKRVADLKGKKKSYFCPYNEDVDEGEGEEGVVGGSAACGALSFAEEESDNNDEASGSLSAPTMATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGSFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQTMNIIEIDTKGGRKITSNGQRDLDQVAGRIVVAP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1296 660 MobiDBLite consensus disorder prediction 371 400 - -
Mibi01g1296 660 ProSitePatterns Ribosomal protein S19e signature. 607 626 IPR018277 GO:0003735|GO:0005840|GO:0006412
Mibi01g1296 660 PANTHER OS06G0683900 PROTEIN 213 505 - -
Mibi01g1296 660 MobiDBLite consensus disorder prediction 40 64 - -
Mibi01g1296 660 SMART Ribosomal_S19e_2 523 659 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mibi01g1296 660 MobiDBLite consensus disorder prediction 80 108 - -
Mibi01g1296 660 Coils Coil 101 142 - -
Mibi01g1296 660 MobiDBLite consensus disorder prediction 282 305 - -
Mibi01g1296 660 MobiDBLite consensus disorder prediction 279 305 - -
Mibi01g1296 660 Gene3D - 499 659 IPR036388 -
Mibi01g1296 660 FunFam 40S ribosomal protein S19 519 660 - -
Mibi01g1296 660 Pfam Ribosomal protein S19e 523 657 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mibi01g1296 660 SUPERFAMILY "Winged helix" DNA-binding domain 523 658 IPR036390 -
Mibi01g1296 660 MobiDBLite consensus disorder prediction 372 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1296 Mibi-ChrMibi01 16871059 16875973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1296 518 660 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 84.615 3.93e-90 275