Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1247 ATGGACGATTCCTTCTCCGACGATAAGCTTTGTGGCTTCCTCTTTGCTGTTCTCACCGTTACTCCTTCACAATCCACTTTGGCCTTCAAAGAACGCTGCGACATCTTCGGCGACAATTCTAATGCCGTCGGATTCAGGTCCGTAAACGGCGTCGTTTTAGTTCCTGTGGATTTGACGGCGAAGCAGAATGAGGGAGAGAACGCGTCTCCTTCTAGGATTGATTTTGATGGCAATGGTATTATTTCGCCTAGGAGATCGCGAAAGAAGGGCAATGCGAGGAGGAAAAATTGTGTGGCTTCGGGGGGTGGTAGTAGCTTGAGGAGGAAGAGGATGACGAAGATTGGGATGGTGAATGGGAGTGTTAGTGTGATTCATCAGCTTCACGCTTTGGTTAGCAAAAAGTGCTTAAAGATTGATGCTTGTGTTGTTTTAGTTGACTTTGGAGACTGTGAGGAGGCTAGAGCAGTGGTACTGGTCGATGTGTATCTTCCAATTGCTTTGTGGAGTGGTTGGCAGTTTCCAAAATCTGGGTCCACTGCTGGTGCTCTTTTTCGGCATTTGAGGTGTGATTGGGACGAGAGAAGATCAATTCTTTCTTGCTCAAACTATATTAGGAAGATCCAGGGGGCTAGTGAGAGCATTTGGAACCTTTGTGACTGTCATGTACTCGGGTGCAAACTCCACAACCATGTGAGAGATTCTCCCAAGAATAGTCTATTTGAACTCCATGAAATTTTTAAGAGTATACCTGGTGTAGGAAAGGGGAGAAAGCCTGATAATTCCAGGATAGTTCCCTTGAATGACTCTTGGAAATTTGGAATTTGGGAGTTATCTGACGACATTTTAACAAAAATTCTAGCTCCCCTAGGCCCAATGGACATTGCTAGGGTTTCTGCAACTTGTCGTCATCTAAGATCCTTGACTGCTTCAATAATGCCTTGTACAAAGTTAAAACTGTTTCCTCACCAGCAGACAGCTGTTGAGTGGATGTTGCATAGGGAGCGAAATGCTGAACACTTAGCACATCCTCTGTATGTTTCTTTTTCAACCGAGGATGGCTTTGCTTTCCATATAAATACTGTATCTGGTGAAATAGTCATAGGGGAAGCACCCACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGACGAGCCTGGTTTGGGTAAGACCGTGACAACTCTTTCTCTTATACTGAAGACTCAAGGTACATTGGCAGATCCACCTGATGGTGAAAAGGTGGTTTGGTGTCACCATAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTCGTTACATGATTGACAGTAGTAATTTGGGGAAGAGGGACATATGTCAGGATGCTAGGAATAATGAGAAACATGATTACTCCTCCAAAAGAGCTCGATTGAAGGTTCCTACTGAGAAAGCCAGTGAGCTTAATAATAAATGTTCTGGGGAAGGAAAAAAATCACCTGTAGGTGAATGCTCTGAGCAGCCAATGGCTGCTGGTCGATGTTCTTGGGGTTTGAGTTGCATAAAGAAAAATCTTTGTGCCACTTTTGAAGAGGAGGCTGGGCATTCCAAAGAAAGGAAAGATAGTGTTAACTCTTTGAAACTGGAACATGCATCAATTGCTGATACATGTGTATCCAAAAATAAGACAATTGATACTTCATGTGGACATGAAAGGGGTTGCGAGGGACTTGAGAAGCCTGCAATCGATTCTATAGAGTACAATGACACTTGGATTCAGTGCGATGCTTGCCAGAAATGGCGAAAGCTTGCCGATGCAAGAATGGCTAATACTAATGCAGCATGGTTTTGTAGTATGAATGCTGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACCCTGGCATAATAGCTGTGAAATAACTTATTTACCTGGATTTCATGTGAAAGGTAGTGCAGGGGGTGAGAAGAAGAATGTTTCATTTTTCACTGGTGTACTTAAGGAGCATTTCACAATGATAAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCTAGACTTCCACCTGACAAGCTTTCTGAAATGGAAATACATGGCATAAGAGGTCCTGTTTTGAGCTCCTGTATTTTGTCTACTCGATATCTAAATCCATATCACAAGATATTTAATGCATTTGGTCTCATTAAGAAATTAGAAAAAGGTGTAAACAAGTGGTATTACCCACGAAATCTAAACAACAATTTGGCTTTTGATGTAACTGCCCTTGGCATGGCTCTGCGTGAACCATTAGATTCATTTAGGCTATACTTATCCAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCAAACATAGTCAGCTGCGAGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCATCTGTGCACAGTCTGGCATGGGATTATGATGTTGTCATCACTACATTTAGTCGTCTAAGTGCAGAGTGGAGCCCACGTAAGAGAAGTGTACTGATGCAGGTCCATTGGCTAAGGATCATATTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGTTATTTCGTTAACAGCTTCAAATCGTTGGATACTAACAGGAACACCGACACCTAACACTCCTAAAAGTCAACTATCACATTTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGTTAAATCCAAAGTCATGGGAAGTTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTTTCGTCTGTTGCATTTACTTCAAAACTGCATGATTAGTGCAAGGAAGATAGACTTGCATAATATCCCCCCATGTATTAAGAAAGCTGTTTTTCTAGATTTTACTGAGGGCCATGCCAGAAGTTATAATGAATTGGTATTAACAGTTCGTCGCAATATATTAATGGCTGATTGGAATGATCCTTCACACATTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGGATTGCAACTATAAAAAACGTCAGGCTCTCATGCTGTGTTGCTGGACATATTAAAGTTACACACGCTGGTGAAGATATTCAGGAAACAATGGATATGTTAGTAGAAGGAGGTATGGATCCTGATTCAGCCGAGTTTTCCTCTATAAAGTATAATCTGCTTTGTGGAGGCCTGTGTGTCAGGTGTGATGAATGGTGTCGCCTTCCCTTCATTACTCCATGTCGGCATCTGTTGTGCCTTGACTGTGTTGCTTTAGACAGTATGAAGTGTACTTATCCTGGATGCAATAAATCATATGAGATGCAGAATCCTGATACACTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGTTACAACCTTCATATAAACAGGATGATTGGGATCCTGATTGGCAATCAACATCTAGTAGCAAGGTATCCTATCTTGTCCAGAGATTGAAAGCTTTACAAGAATCCAATAAGGAGAAGGGCTACTATACTAGCAATTATCAGATTCTTGCTGAGAGCAGTTGCCCTCTGGTGATGAGAGACATGAAATCATCATTCCAGCATTTCCCTCTAAACACTGAGCCCAATAACATGCCTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAACATATAAATGTCATTGAACGGCAGTTGACTATTGCTGGTATTGAATTCACTGGGATGTATAGTCCAATGCCTTTAACCAGCAAGAAGAAGTCACTGGCCACATTCCAGCATAATCCCGGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTGACACATGTGTTTTTAATGGAACCGATATGGGATAGAAGCATGGAGGAACAGGTGATTAGTCGTGCTCATCGTATGGGTGCTTGTCGTCCTATTCATGTGGAAACATTAGCAATGCGGGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAGAAGAAGAAACTCTCCTAGTGAAGCTGTTGTCCAATCTGATGATGGTAGAGAATTCTCAGCTGAAGGTGTTATCCTATCTGAAGAAGGGGGACGAGGACGTTCTTTGCATGATTTTGCAGAAAATAGTTATCTACTGAAACTTAGATTTGTGAACACCACTCCTAATGCCACTGAAGGTATCTGA 4155 0.4173 MDDSFSDDKLCGFLFAVLTVTPSQSTLAFKERCDIFGDNSNAVGFRSVNGVVLVPVDLTAKQNEGENASPSRIDFDGNGIISPRRSRKKGNARRKNCVASGGGSSLRRKRMTKIGMVNGSVSVIHQLHALVSKKCLKIDACVVLVDFGDCEEARAVVLVDVYLPIALWSGWQFPKSGSTAGALFRHLRCDWDERRSILSCSNYIRKIQGASESIWNLCDCHVLGCKLHNHVRDSPKNSLFELHEIFKSIPGVGKGRKPDNSRIVPLNDSWKFGIWELSDDILTKILAPLGPMDIARVSATCRHLRSLTASIMPCTKLKLFPHQQTAVEWMLHRERNAEHLAHPLYVSFSTEDGFAFHINTVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTTLSLILKTQGTLADPPDGEKVVWCHHNGNLKCGYYDIVGRYMIDSSNLGKRDICQDARNNEKHDYSSKRARLKVPTEKASELNNKCSGEGKKSPVGECSEQPMAAGRCSWGLSCIKKNLCATFEEEAGHSKERKDSVNSLKLEHASIADTCVSKNKTIDTSCGHERGCEGLEKPAIDSIEYNDTWIQCDACQKWRKLADARMANTNAAWFCSMNADPLYQSCSIPEQPWHNSCEITYLPGFHVKGSAGGEKKNVSFFTGVLKEHFTMINSETKKALTWLARLPPDKLSEMEIHGIRGPVLSSCILSTRYLNPYHKIFNAFGLIKKLEKGVNKWYYPRNLNNNLAFDVTALGMALREPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVKHSQLRVYVWNDTWKWKPSVHSLAWDYDVVITTFSRLSAEWSPRKRSVLMQVHWLRIILDEGHTLGSSLNLTNKLQMVISLTASNRWILTGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEVGILKPFEAEMEEGRFRLLHLLQNCMISARKIDLHNIPPCIKKAVFLDFTEGHARSYNELVLTVRRNILMADWNDPSHIESLLNPKQWKFRIATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVEGGMDPDSAEFSSIKYNLLCGGLCVRCDEWCRLPFITPCRHLLCLDCVALDSMKCTYPGCNKSYEMQNPDTLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQESNKEKGYYTSNYQILAESSCPLVMRDMKSSFQHFPLNTEPNNMPEKVLIFSQFLEHINVIERQLTIAGIEFTGMYSPMPLTSKKKSLATFQHNPGCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQDADRRRNSPSEAVVQSDDGREFSAEGVILSEEGGRGRSLHDFAENSYLLKLRFVNTTPNATEGI 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1247 1384 Pfam F-box domain 276 313 IPR001810 GO:0005515
Mibi01g1247 1384 Gene3D - 742 936 IPR038718 -
Mibi01g1247 1384 Pfam SNF2-related domain 322 978 IPR000330 GO:0005524|GO:0140658
Mibi01g1247 1384 ProSiteProfiles Zinc finger CW-type profile. 571 622 IPR011124 GO:0008270
Mibi01g1247 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 400 IPR027417 -
Mibi01g1247 1384 MobiDBLite consensus disorder prediction 63 105 - -
Mibi01g1247 1384 SMART helicmild6 1213 1295 IPR001650 -
Mibi01g1247 1384 Gene3D - 569 622 - -
Mibi01g1247 1384 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 725 892 IPR014001 -
Mibi01g1247 1384 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 125 1322 - -
Mibi01g1247 1384 SMART fbox_2 277 317 IPR001810 GO:0005515
Mibi01g1247 1384 Pfam Helicase conserved C-terminal domain 1197 1295 IPR001650 -
Mibi01g1247 1384 SMART ultradead3 315 906 IPR014001 -
Mibi01g1247 1384 Pfam CW-type Zinc Finger 576 619 IPR011124 GO:0008270
Mibi01g1247 1384 SUPERFAMILY F-box domain 273 309 IPR036047 GO:0005515
Mibi01g1247 1384 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1185 1340 IPR001650 -
Mibi01g1247 1384 CDD DEXDc_SHPRH-like 747 933 - -
Mibi01g1247 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 834 1321 IPR027417 -
Mibi01g1247 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 758 921 IPR027417 -
Mibi01g1247 1384 CDD SF2_C_SNF 1200 1305 - -
Mibi01g1247 1384 Gene3D - 1091 1352 IPR027417 -
Mibi01g1247 1384 ProSitePatterns Zinc finger RING-type signature. 1070 1079 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1247 Mibi-ChrMibi01 16095620 16101635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1247 318 414 RAD5 or RAD16-like Gene Family AT5G22750 30.000 1.26e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi01g1247 SNF2_N 1.5e-97 CL0023