Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1233 ATGTCTATACGGCAGCATAATAATGTTGAGCTCAGGGGTGTTTCAGCTGTAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGCGCTGAATCTCCAAATTTCCAATCCCAAAAGAATCAGTCGATGCCTTCATCCGGTCCTCTAGAAAGGTTAGAGAAGTTGATGCACGAAGCTGGGAACAAGTATTGTGCTGATTGTGGGTCTCCAGAGCCAAAATGGGTATCTTCAAATATTGGGGCATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGCCTAGGAGTTCATATATCAAAGGTTTTATCTTTGAAGCTTGATCAATGGACAGATGATGAAGTTTCTGCACTGGCAGAGTTGGGAGGGAATACATCTGTAAATAAAAAGTATGAAGCTTACATGCCTAGTTATATAAAAAAGCCAAAGCCAACTTCCTCCGTTGAGGAACGTATTGACTTTATCAGGAGAAAATACGAGATGCTACAATTTATGGAGTGTGATGAACAACTGTCCTGCCCCTTTGTACCACAACGGAGCAGTTCCTCATATAGTTCTCCTCTAGACAAGAAAATTTATAATAAGATAGCGAACAAAAATCGTTTTGGGAGCGCATTTCGTAACAGCTGGGTTAGGAAAGAACCTGATATTAATAATAATAAGGGTTCAAAGAAGAGCAACTCATTGGCAGGCATGGTGGAATTTGTTGGGTTGATAAAGGTTAATGTGGTCAAAGGCACTAACCTGGTTATCCGGGATGTAATGACTAGTGATCCTTATGTCATTCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTGAATCCTGTATGGAATGAGCGCCTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTATATGACAAAGATACATTCTCATCTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCCTACTCGCAACTGCACAAGCCTACGAGAAATCGAGAGCCAATGAATCCATGGAGTTCAAGAAATGGGTGGCAGGTTTGGACAACGCCCTCATTGAAGATGGAGTCATCTCCCTTGAAGATGGGAAGATCAGACAGGAAATATCTGTAAAGCTGAAGAATGTGGAGAGAGGGGTGCTGGAAGTTGAGCTTGAGTGTCTTCCTCTCACTCAATAA 1176 0.4133 MSIRQHNNVELRGVSAVGSGCCLYDLLCAESPNFQSQKNQSMPSSGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVSALAELGGNTSVNKKYEAYMPSYIKKPKPTSSVEERIDFIRRKYEMLQFMECDEQLSCPFVPQRSSSSYSSPLDKKIYNKIANKNRFGSAFRNSWVRKEPDINNNKGSKKSNSLAGMVEFVGLIKVNVVKGTNLVIRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNERLMLSIPHNIPPLKVHVYDKDTFSSDDFMGEAEIDIQPLLATAQAYEKSRANESMEFKKWVAGLDNALIEDGVISLEDGKIRQEISVKLKNVERGVLEVELECLPLTQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1233 391 ProSiteProfiles C2 domain profile. 218 333 IPR000008 -
Mibi01g1233 391 CDD ArfGap 51 157 - -
Mibi01g1233 391 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 391 IPR044518 GO:0005096|GO:0005543
Mibi01g1233 391 SUPERFAMILY ArfGap/RecO-like zinc finger 50 163 IPR037278 -
Mibi01g1233 391 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 233 391 - -
Mibi01g1233 391 Pfam C2 domain 236 327 IPR000008 -
Mibi01g1233 391 ProSiteProfiles ARF GTPase-activating proteins domain profile. 45 170 IPR001164 GO:0005096
Mibi01g1233 391 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Mibi01g1233 391 Pfam Putative GTPase activating protein for Arf 50 164 IPR001164 GO:0005096
Mibi01g1233 391 SMART C2_3c 236 331 IPR000008 -
Mibi01g1233 391 Gene3D Arf GTPase activating protein 30 170 IPR038508 -
Mibi01g1233 391 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 232 326 IPR035892 -
Mibi01g1233 391 FunFam stromal membrane-associated protein 1 isoform X1 33 168 - -
Mibi01g1233 391 Gene3D C2 domain 234 390 IPR035892 -
Mibi01g1233 391 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Mibi01g1233 391 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Mibi01g1233 391 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Mibi01g1233 391 CDD C2_ArfGAP 234 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1233 Mibi-ChrMibi01 15918681 15921989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1233 43 391 C2H2 Transcription Factor Family AT4G21160 48.857 1.10e-121 354