Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1141 ATGGGTAGAGGGAAGATTGAAATCAAAAGGATCGAGAATGCCAACAGCCGCCAAGTCACATTCTCCAAGAGGCGTAATGGATTGCTCAAGAAGGCTCAGGAACTTGCTATTCTCTGTGATGCTGAGGTTGCTGTGATCATTTTCTCTAATACCGGGAAGCTCTTCGAGTTTTCGAGCTCTGGTATGATGCGAACACTTTCAAGATACAACAAATGTTTTAATTCTTCAGAGGCTGCTGTGGTGGAATGTAAGGCAGAGGTACTCTATCATATACCCATTAACCATGAGCATAGTAAAATCCATAATCTTTCCCCTGTTTTTAAGAAGGAAGATCCTAAGACAGTGGAGATTCTGAAAGATGAAATTGCAAAGCTAGAAAAGAAGCAGTTGCGGTTGTTGGGTAAGGACCTGGCTGGGTTGAATTTAAAAGAACTGCACCAGCTTGAACAGCAACTTAACGAATCGTTATTTTCTGTCAAGGAGAAGAAGGAGGAATTGCTTATGGAGCAACTGGAGCAATCGAGAGTACAGGAACAAAGGGCTATGTTGGAGAATGAAACTCTGCGCAGACAGGTGGAGGAGCTTCGCTGTTTGTTTCCAATAACTGAGCATGTGATCCCATCTTTTCTTCAATATCACCATGTGAAAAGAAGGGACACCCCTGTAAATAATGGCGTCCTATGTTCCAACTTGGCCAGTAACTGTGAAAATGAGAATGGAGATTCAGACACTACCTTGCATTTAGGGTTGCCCACTGATGTTCATTACAAGAGGAAGGCACTTGAGAAAGAAACATTCTCCAATGACTCTGAATCTCAAATGGTGCACAATCACTGTATGCAAAGAAATTACTTTGATTATATTTACATATATGATTACTATCACTAA 888 0.4133 MGRGKIEIKRIENANSRQVTFSKRRNGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMMRTLSRYNKCFNSSEAAVVECKAEVLYHIPINHEHSKIHNLSPVFKKEDPKTVEILKDEIAKLEKKQLRLLGKDLAGLNLKELHQLEQQLNESLFSVKEKKEELLMEQLEQSRVQEQRAMLENETLRRQVEELRCLFPITEHVIPSFLQYHHVKRRDTPVNNGVLCSNLASNCENENGDSDTTLHLGLPTDVHYKRKALEKETFSNDSESQMVHNHCMQRNYFDYIYIYDYYH 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1141 295 Coils Coil 115 135 - -
Mibi01g1141 295 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi01g1141 295 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi01g1141 295 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi01g1141 295 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Mibi01g1141 295 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mibi01g1141 295 Pfam K-box region 114 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g1141 295 ProSiteProfiles K-box domain profile. 108 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g1141 295 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi01g1141 295 Coils Coil 145 165 - -
Mibi01g1141 295 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mibi01g1141 295 Coils Coil 171 198 - -
Mibi01g1141 295 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi01g1141 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi01g1141 295 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Mibi01g1141 295 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi01g1141 295 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1141 Mibi-ChrMibi01 14748740 14753878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1141 1 283 MADS-box Gene Family AT5G13790 50.352 2.15e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi01g1141 K-box 7e-17 No_clan