Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1107 ATGTCTCCAAAAGTCCCTCTTCTCTCCATCCTCCTCCTCCTCCTCATTTCTCTGATGTCATCATCCTTTTGCTTTGGCTCTCACATTCATCACAACTCTCACAATGCTCCAAAACATGAACACTTCGGCCTCATGAGAAGATCTTACAGAACCAGCAAGTCTCCTTCAACCTCTCGTCAAGCAACACTCAGTGTTGATGACTATGGCGCCAAAGCCAGCGGAAACGATGACTCTCAGGCCTTCCTGAAGGCTTGGAAAGCGGCTTGTTCCTCTGGGTCTATTCTTGTTGTCCCTGAGAACAAGGTCTATCATCTTAAGCCTGTGAAATTTTCAGGTCCATGCCAGCCAAATACCGCTTTCATGGTGTATGGAACAATCATGGCATGGTCTGACATGTCTGAGTATGAAGAAGATCGAAGGTTTTGGATTCAGTTCGTAGGAATCAAAAACTTCAAAGTTGATGGTGCTGGTAAAGGCACTATTGATGGCAATGGCAAGATATGGTGGCAACACTCCTGCAAAACCAACCCAAGCCTCCCGTGCAAGCAAGCACCAACTGCTGTAACTTTCAGCCAATGCAACAACTTGATCGTGCAAAACCTGAGATTCCAGAATCCACAGCAAATGCATATGAATTTTGATCAAAGCTTTAATGTTAAAGTCTCTAGTCTGATAGTGCAAGCCCCAGGAAACAGCCCCAATACTGATGGGATTCATGTCACAGCAACACAGAATATATTCATAAGCAACAGCATCATTGGCACAGGTGATGACTGCATTTCAATAGTAAGTGGGTCTAGCAATGTTAGAGCTACAGACATCACCTGCGGACCAGGACATGGAATCAGTATTGGGAGTTTAGGAGCTGATGACAAAGAAGCAGAAGTGTCGAATGTGGTAGTTAACGGAGCAACATTGATAGGAACAATGAATGGGGTGAGAATTAAGACATGGCAGGGAGGGTCAGGATATGCAAAAAATATAAAGTTTATGAATATACAAATGAGAAATGTGAGCAACCCCATCATCATTGATCAAAACTACTGTGATCAACAACAACAATGCCATGAACAGGGATCAGCTGTGCAACTAAGCGATGTGGTCTATCAGAACATAAAAGGGACAAGTGCATCAGAAGTGGCCGTCAAATTTGATTGCAGCCAAACAAGGCCTTGTGAAGACATATATGTCGAAGATGTGTTCTTAAAAACACAAGGACGTGGAGGAACTGTTGCTACTTGTGACAATGTTAGATTTGTCAACAGAGAAAACCTCGTTCCTCAGTGTTCCTGA 1293 0.4362 MSPKVPLLSILLLLLISLMSSSFCFGSHIHHNSHNAPKHEHFGLMRRSYRTSKSPSTSRQATLSVDDYGAKASGNDDSQAFLKAWKAACSSGSILVVPENKVYHLKPVKFSGPCQPNTAFMVYGTIMAWSDMSEYEEDRRFWIQFVGIKNFKVDGAGKGTIDGNGKIWWQHSCKTNPSLPCKQAPTAVTFSQCNNLIVQNLRFQNPQQMHMNFDQSFNVKVSSLIVQAPGNSPNTDGIHVTATQNIFISNSIIGTGDDCISIVSGSSNVRATDITCGPGHGISIGSLGADDKEAEVSNVVVNGATLIGTMNGVRIKTWQGGSGYAKNIKFMNIQMRNVSNPIIIDQNYCDQQQQCHEQGSAVQLSDVVYQNIKGTSASEVAVKFDCSQTRPCEDIYVEDVFLKTQGRGGTVATCDNVRFVNRENLVPQCS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1107 430 Gene3D - 46 427 IPR012334 -
Mibi01g1107 430 FunFam Polygalacturonase QRT2 48 430 - -
Mibi01g1107 430 ProSitePatterns Polygalacturonase active site. 273 286 IPR000743 GO:0004650|GO:0005975
Mibi01g1107 430 SUPERFAMILY Pectin lyase-like 57 427 IPR011050 -
Mibi01g1107 430 SMART pbh1 243 264 IPR006626 -
Mibi01g1107 430 SMART pbh1 216 242 IPR006626 -
Mibi01g1107 430 SMART pbh1 325 346 IPR006626 -
Mibi01g1107 430 SMART pbh1 296 317 IPR006626 -
Mibi01g1107 430 PANTHER - 61 417 - -
Mibi01g1107 430 Pfam Glycosyl hydrolases family 28 95 418 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1107 Mibi-ChrMibi01 14406383 14409202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1107 1 430 Glycoside Hydrolase AT3G07970 53.708 8.45e-159 454
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g1784 07 36970141 36971169 Mibi01g1107 01 14406383 14409202 CCT
Mibi01g1107 01 14406383 14409202 Mibi01g1107 01 14406383 14409202 ECH