Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1101 ATGCAAGGAGCTATGAAAACCTTTGCTGTGGATGAGACTAGTGCAAGCGGATTGGCAATGGGAAAGAACGAGTTTCTTACACCAAAGGCTATAGCTAATCGAATCAAAGCAAAGGGGCTGCAGAAGCTTCGGTGGTACTGCCAGATGTGTCAGAAACAATGTCGAGATGAGAATGGGTTCAAGTGTCATAGCATGAGTGAAAGCCACCAGCGTCAAATGCAAATCTTTGGACAAAACCAAAATCGAATAATTGAGGGCTACTCTGAGGAGTTTGAGAACACCTTTCTTGAGCACATGAAGCGCAGCCACCGATTCAGTCGTATTGCTGCAACAGTAGTTTACAATGAATACATTAGTGACAGACATCACATTCATATGAATTCCACACGATGGCTTACACTTACTGAGTTTGTCAAGTATTTGGGTCGTACCGGAAAGTGTAAGGTTGAAGAAACAACCAAGGGTTGGTTTATCACCTATATTGATAGGGATTCTGAGACTCTTTTTAAAGAGAGGATGAAGAATAAGAGAATAAAGTCTGACATGGCAGAAGAAGAGAAGCAAGAGAAGCAGATACAGAAACAAATAGAAAAGGTTGAGCAGTTGCTGCAGCCATCTGCCTCTGGATCTGATCAAACTTCAGAGGCTGAACTTCCTAGGGAGTTTAAAGTGGAAGATGGAGTTAAGATTGGGTTTTCTCTTGGTTCATCTGCAAAATCTTTAACCAAGGAAAAAAGGGAGGGACCAAAGGTAGTGTTTGATGAGGGCGAGGATGCCATAAAGGAAGAAAGGAAACCTGGAGGCTTTTTGAAGAGGAAAGAAAATGGTGGTGGAAAATCAACATTAGATGAATTGATGAGGGAAGATGAGAAGAAAAGGGAGAAGATTAGTAGAAAGGATTACTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTTTTGGCTGATAAAGGGTATTACAAGCAAAAAGGTGTTGTGTTAAAGGTGATTGATAAGTATGTTGGGGAAATAGAGATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAAGCAGGGCTGGAAACTGTAATCCCTCAAATTGGTGGTCTTGTCAAGATTGTAAATGGAGCTTATGGCGGATCTACAGCGAGACTGTTAGGGGTTGATACTGATCGCTTTTGTGCCAAGGTGCAGATAGAGAAAGGTCCTTACGATGGTAGAGTTCTCAAGGCAATGGAATATGAGGATATTTGCAAATTAGCCTAG 1251 0.4173 MQGAMKTFAVDETSASGLAMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHSMSESHQRQMQIFGQNQNRIIEGYSEEFENTFLEHMKRSHRFSRIAATVVYNEYISDRHHIHMNSTRWLTLTEFVKYLGRTGKCKVEETTKGWFITYIDRDSETLFKERMKNKRIKSDMAEEEKQEKQIQKQIEKVEQLLQPSASGSDQTSEAELPREFKVEDGVKIGFSLGSSAKSLTKEKREGPKVVFDEGEDAIKEERKPGGFLKRKENGGGKSTLDELMREDEKKREKISRKDYWLHEGIVVKVMSKVLADKGYYKQKGVVLKVIDKYVGEIEMLESKHVLRVDQAGLETVIPQIGGLVKIVNGAYGGSTARLLGVDTDRFCAKVQIEKGPYDGRVLKAMEYEDICKLA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1101 416 Pfam KN17 SH3-like C-terminal domain 298 351 IPR041330 -
Mibi01g1101 416 MobiDBLite consensus disorder prediction 263 283 - -
Mibi01g1101 416 Pfam Domain of Kin17 curved DNA-binding protein 71 196 IPR019447 -
Mibi01g1101 416 FunFam DNA/RNA-binding protein KIN17, putative 80 179 - -
Mibi01g1101 416 ProSitePatterns Zinc finger C2H2 type domain signature. 47 69 IPR013087 -
Mibi01g1101 416 Gene3D - 306 359 - -
Mibi01g1101 416 FunFam DNA/RNA-binding protein kin17-like 306 359 - -
Mibi01g1101 416 Coils Coil 173 202 - -
Mibi01g1101 416 Gene3D - 360 416 IPR014722 -
Mibi01g1101 416 CDD KOW_KIN17 362 415 IPR041995 -
Mibi01g1101 416 FunFam DNA/RNA-binding protein KIN17, putative 360 416 - -
Mibi01g1101 416 Gene3D - 79 179 IPR038254 -
Mibi01g1101 416 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 20 416 IPR037321 -
Mibi01g1101 416 SMART Kin17_mid_2 71 197 IPR019447 -
Mibi01g1101 416 SUPERFAMILY beta-beta-alpha zinc fingers 45 80 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1101 Mibi-ChrMibi01 14359356 14364716 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1101 20 416 C2H2 Transcription Factor Family AT1G55460 70.631 0.0 569