Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1064 ATGACAGATCCTCATCACTCCAATTTCCTATCAAAGTCCTTCAACTTTGTTCCTCTTCATCCTCACTTGTACTCTTCCAATTCCTTCACCAATTTCTCCATTCAATTCCAACCTCCTCCTCCTCCTTCTCATCATCATCCAGTAAGAGAAGCCCTTCCTCTTTTGAACAACCTCAATCTCCTCACTAACAACCAAACAACCCCTAATCATCATCATGAACACCAACCACCCTCCACCATTAATAAACACCCTTCTTCTTCTTCTTCTTCTTCTGATCAGGCCACTAGTGATGAGACTGTGACTGTTGCTCTACGCATAGGACTTCCCTCCATCATTTCCACCACCACCACCACCACCACTAGCAGTAGCAGTAGTAACACTCAGATTTCCAACTCCCTTGAAACGACCACGTTTGACAAGGATGAAGTTCCTCCTGCTCGTGTCGTTTTGGGACAAAACTCTCTGGATGGGTTGAAGAAAGGGCAGTACTGGATTCCTACTCCTTCTCAGATCCTTATTGGCCCTACTCAGTTCTCGTGCCCTGTCTGCTCCAAAACCTTCAATAGATATAACAATCTTCAGATGCATATGTGGGGGCATGGATCACAGTACAGGAAGGGACCAGATTCTCTAAGAGGAACACAGCCTACGGCAATGCTAAGGCTACCATGTTTCTGTTGTGCACAAAACTGCAAGCATAACATAGACCACCCAAGGGCAAGGCCTTTGAAGGATTTCAGAACCCTCCAAACTCATTACAAGAGGAAGCACGGAACCAAACCCTACCTTTGCAGAAAATGCAGCAAAGCTTTCGCTGTTAAAGGTGATTGGAGGACCCACGAGAAGAATTGTGGCAAAATATGGTATTGCCTTTGTGGTTCTGACTTCAAACACAAGAGGTCCCTTAAGGACCACATTAGGGCTTTTGGCCATGGCCATGCTGGTGCTTTTCCTTCTGGCCTTGATCATAATAATTGCTTGCATGAGGAAGAAGAGGAAGAAGACGAGGCTAATTCGGAGATTGAACATGATAATAATAATAACAATGGCGACATCTCAATATGA 1065 0.4488 MTDPHHSNFLSKSFNFVPLHPHLYSSNSFTNFSIQFQPPPPPSHHHPVREALPLLNNLNLLTNNQTTPNHHHEHQPPSTINKHPSSSSSSSDQATSDETVTVALRIGLPSIISTTTTTTTSSSSSNTQISNSLETTTFDKDEVPPARVVLGQNSLDGLKKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAQNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHAGAFPSGLDHNNCLHEEEEEEDEANSEIEHDNNNNNGDISI 354
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1064 354 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Mibi01g1064 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 318 IPR013087 -
Mibi01g1064 354 PANTHER ZINC FINGER PROTEIN WIP2 24 346 IPR043584 GO:0003700|GO:0010468
Mibi01g1064 354 Pfam Zinc finger, C2H2 type 178 197 IPR013087 -
Mibi01g1064 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Mibi01g1064 354 MobiDBLite consensus disorder prediction 329 354 - -
Mibi01g1064 354 FunFam Zinc finger protein WIP2 231 313 - -
Mibi01g1064 354 FunFam zinc finger protein WIP2-like 177 200 - -
Mibi01g1064 354 SMART c2h2final6 178 200 IPR013087 -
Mibi01g1064 354 SMART c2h2final6 262 282 IPR013087 -
Mibi01g1064 354 SMART c2h2final6 288 311 IPR013087 -
Mibi01g1064 354 SUPERFAMILY beta-beta-alpha zinc fingers 246 282 IPR036236 -
Mibi01g1064 354 Gene3D Classic Zinc Finger 221 310 - -
Mibi01g1064 354 Gene3D Classic Zinc Finger 177 200 - -
Mibi01g1064 354 SUPERFAMILY beta-beta-alpha zinc fingers 174 200 IPR036236 -
Mibi01g1064 354 MobiDBLite consensus disorder prediction 61 98 - -
Mibi01g1064 354 MobiDBLite consensus disorder prediction 114 138 - -
Mibi01g1064 354 Coils Coil 327 347 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mibi01g1064 Mibi-ChrMibi01 13941281 13944287 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1064 48 347 C2H2 Transcription Factor Family AT3G57670 57.099 6.69e-112 329
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g1064 zf-C2H2_6 9.6e-05 CL0361