LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g1064	ATGACAGATCCTCATCACTCCAATTTCCTATCAAAGTCCTTCAACTTTGTTCCTCTTCATCCTCACTTGTACTCTTCCAATTCCTTCACCAATTTCTCCATTCAATTCCAACCTCCTCCTCCTCCTTCTCATCATCATCCAGTAAGAGAAGCCCTTCCTCTTTTGAACAACCTCAATCTCCTCACTAACAACCAAACAACCCCTAATCATCATCATGAACACCAACCACCCTCCACCATTAATAAACACCCTTCTTCTTCTTCTTCTTCTTCTGATCAGGCCACTAGTGATGAGACTGTGACTGTTGCTCTACGCATAGGACTTCCCTCCATCATTTCCACCACCACCACCACCACCACTAGCAGTAGCAGTAGTAACACTCAGATTTCCAACTCCCTTGAAACGACCACGTTTGACAAGGATGAAGTTCCTCCTGCTCGTGTCGTTTTGGGACAAAACTCTCTGGATGGGTTGAAGAAAGGGCAGTACTGGATTCCTACTCCTTCTCAGATCCTTATTGGCCCTACTCAGTTCTCGTGCCCTGTCTGCTCCAAAACCTTCAATAGATATAACAATCTTCAGATGCATATGTGGGGGCATGGATCACAGTACAGGAAGGGACCAGATTCTCTAAGAGGAACACAGCCTACGGCAATGCTAAGGCTACCATGTTTCTGTTGTGCACAAAACTGCAAGCATAACATAGACCACCCAAGGGCAAGGCCTTTGAAGGATTTCAGAACCCTCCAAACTCATTACAAGAGGAAGCACGGAACCAAACCCTACCTTTGCAGAAAATGCAGCAAAGCTTTCGCTGTTAAAGGTGATTGGAGGACCCACGAGAAGAATTGTGGCAAAATATGGTATTGCCTTTGTGGTTCTGACTTCAAACACAAGAGGTCCCTTAAGGACCACATTAGGGCTTTTGGCCATGGCCATGCTGGTGCTTTTCCTTCTGGCCTTGATCATAATAATTGCTTGCATGAGGAAGAAGAGGAAGAAGACGAGGCTAATTCGGAGATTGAACATGATAATAATAATAACAATGGCGACATCTCAATATGA	1065	0.4488	MTDPHHSNFLSKSFNFVPLHPHLYSSNSFTNFSIQFQPPPPPSHHHPVREALPLLNNLNLLTNNQTTPNHHHEHQPPSTINKHPSSSSSSSDQATSDETVTVALRIGLPSIISTTTTTTTSSSSSNTQISNSLETTTFDKDEVPPARVVLGQNSLDGLKKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAQNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHAGAFPSGLDHNNCLHEEEEEEDEANSEIEHDNNNNNGDISI	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g1064	354	ProSitePatterns	Zinc finger C2H2 type domain signature.	180	200	IPR013087	-
	Mibi01g1064	354	ProSiteProfiles	Zinc finger C2H2 type domain profile.	282	318	IPR013087	-
	Mibi01g1064	354	PANTHER	ZINC FINGER PROTEIN WIP2	24	346	IPR043584	GO:0003700\|GO:0010468
	Mibi01g1064	354	Pfam	Zinc finger, C2H2 type	178	197	IPR013087	-
	Mibi01g1064	354	ProSiteProfiles	Zinc finger C2H2 type domain profile.	178	205	IPR013087	-
	Mibi01g1064	354	MobiDBLite	consensus disorder prediction	329	354	-	-
	Mibi01g1064	354	FunFam	Zinc finger protein WIP2	231	313	-	-
	Mibi01g1064	354	FunFam	zinc finger protein WIP2-like	177	200	-	-
	Mibi01g1064	354	SMART	c2h2final6	178	200	IPR013087	-
	Mibi01g1064	354	SMART	c2h2final6	262	282	IPR013087	-
	Mibi01g1064	354	SMART	c2h2final6	288	311	IPR013087	-
	Mibi01g1064	354	SUPERFAMILY	beta-beta-alpha zinc fingers	246	282	IPR036236	-
	Mibi01g1064	354	Gene3D	Classic Zinc Finger	221	310	-	-
	Mibi01g1064	354	Gene3D	Classic Zinc Finger	177	200	-	-
	Mibi01g1064	354	SUPERFAMILY	beta-beta-alpha zinc fingers	174	200	IPR036236	-
	Mibi01g1064	354	MobiDBLite	consensus disorder prediction	61	98	-	-
	Mibi01g1064	354	MobiDBLite	consensus disorder prediction	114	138	-	-
	Mibi01g1064	354	Coils	Coil	327	347	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g1064	Mibi-ChrMibi01	13941281	13944287	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g1064	48	347	C2H2 Transcription Factor Family	AT3G57670	57.099	6.69e-112	329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Mibi01g1064		zf-C2H2_6	9.6e-05	CL0361