Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1063 ATGTCTAGGAGGATTTGTAAGTTCTATGCCCGTGGAAGATGTTTCAGAGGGGAGCAATGTGATTATTCTCATGACGAACAGGATGCTCCAGTTGATGTTTGCGCATTCTATCAGAAGGGAAACTGCTCTTTCGGTAGTCGATGTAGATATAAACATGTTAAAGCTTCTCAGGTAAGTTCTGCACCATCTTCAGAAAATAGTCGGCAATCTCTGCCTTCAAAGTCTGCTGTAGATCATTCTGCTAGAGGAAAATCAAGGTGGATCCCCAAGAATGCAAATTCTGCTAGCTCTGATCATCTTAACCATCCGAATTCTCTAAAGAATGATGATGTCGGTGAGTCTAGCAATGCTACACCTTCAAAGCGTATTTTATGCACATATGCGGCAGCCAACTGTCCCTTGGGAAAAAAGTGTTCGCGCATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTACTGCTTGCATCCTTCTGACCAGAGGGAGAGAGAGAATCATTTGAATACTTGTGACAGAAAGGAAAAATACAATCAGGCATTAAAAGACAGTCAAGAAATAGAATGCAATATTTGCTTGGATCGAGTTCTTTCAAAGCCTAAAGCATCTGAATGCAAGTTTGGAATGCTTCCTGAATGCGACCATGCTTTCTGTTTATCCTGTATCAGAAATTGGCGGAACAGTGCCTCAAATTCTGAAATCGACATCTTTAAAATTGCTAACAATAATACAGTGAGGACTTGCCCTGTATGTCGCAAGCTATCCTATTTTGTGATTCCAACACCTATATGGTACTCCACAAAGGAAGAAAAGCAGGAAATCATTGATAACTACAAGGCAAATTGCAAGTTGATTGACTGCAAGCATTTCGAGTTTGGAAACGGGAGCTGTCCATTTGGAACTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCAGTGATGTGGAAACATGGTAGGCCACCACCCTCTCGCCGCCCAAGAGCACAAAATAATATGGATATGTATGAAATGATAGATATGCTCAGTGAACTTGATTTACAAAGTGGTGAATTCTTTTCCATCATGCGGGACTCTGAGTTTTTTGAAGATATGGATCCTTATGAGATGATGGCTGTATCAGATATGCTGGCTGGTTCTGGTTCAGGCCCTAGATTTTTTCATGATGAAGATTCTGATGATGATGAAATGGGGTTTTTTGAGATGGCTGCTCTATCAGCGGCCCTGGATAGTCCTTTTGAGGATTCCGACAATGATGAATTGAATCCTTCGCAAGCAGCGTTCTTGTCAATGATAATGCAATCTAACATGGAAGAAGACAGTGAAGGGGACGAGGATGACTAGTTGAGATTTCACCTGAGAAGGTTCGTTAATCCTCTAAGAAAGGCGTCAGTTACCCCTACCCCTCTTGACACCGTAAAGGGAAGGCCCTTGTTCGTTGCAAATAACGTTGCTAGGAAGTATGGTCTGTCTTTCTATTTCAACTTACATATCATTCTAAATTCTACACGATTGTTTCCTGAATCCTCTAGGGTTCTTTGCAAATTCTTTGCCCATGGAGCATGTCTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAATGATCCTCCAAACAACATATGTACGTTTTATCAGAAAGGAGTCTGTGCCTATGGTAGTCACTGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCTATCATACATCTTCTTCTGCAAGTTTACACCCCCAAAATTCAGATTCCTCTATACATGGTGGTACTAGAGTTACATCAAATGGGGCTGTTACAATTCCTGAGTTGTCTTCTCATAGCGGACCTTCCTTTCCTATTATCCCTGCATGGAATGGAGAAAATGAGTTTCCTATTCCTGATTCTTTTCATGCTTGGAATCCAGAACCTAAGTATCAGGAGTTTTTAGAGGATAGTGATGTCAGTGAATCCAGAATTACTGATCCTTCTGAGCGTCCTATCTGTTCATTTGCTGCTGCTGGTAATTGTCCCAGGAAGGAGAAATGCCCTTTTATTCATGGAGATTTGTGTCCTACCTGTGGAAAGCACTGCTTGCATCCTTTTCGGCCTGAAGAAAGAGAGGAACATATGAATACTTGCCAAAGAAAGCAAAAACACCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCTTACAGCAGCTGAACGCAAGTTTGGGCTGCTATCTGAATGTGATCATCCCTTCTGCATCTCTTGTATTAGGAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGTCGTAAGCTCTCTTACTTTGTGATTCCAAGTGTCATTTGGTATTCTACATCGGAAGAAAAAGAGGAAATCATCGAGAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAATGGAAACTGCCCTTTTGGTACTAGCTGTTTCTACAAGCATGCTTACCGAGATGGCAGACTTGAGGAAGCAGTTCTGAGGCATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACATCAGGCTGTCAGATTTCTTTGCTAATATGCATTTAAGATGA 2628 0.4201 MSRRICKFYARGRCFRGEQCDYSHDEQDAPVDVCAFYQKGNCSFGSRCRYKHVKASQVSSAPSSENSRQSLPSKSAVDHSARGKSRWIPKNANSASSDHLNHPNSLKNDDVGESSNATPSKRILCTYAAANCPLGKKCSRIHGDQCLYCRKYCLHPSDQRERENHLNTCDRKEKYNQALKDSQEIECNICLDRVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSASNSEIDIFKIANNNTVRTCPVCRKLSYFVIPTPIWYSTKEEKQEIIDNYKANCKLIDCKHFEFGNGSCPFGTRCFYKHTVKPGSVMWKHGRPPPSRRPRAQNNMDMYEMIDMLSELDLQSGEFFSIMRDSEFFEDMDPYEMMAVSDMLAGSGSGPRFFHDEDSDDDEMGFFEMAALSAALDSPFEDSDNDELNPSQAAFLSMIMQSNMEEDSEGDEDDXLRFHLRRFVNPLRKASVTPTPLDTVKGRPLFVANNVARKYGLSFYFNLHIILNSTRLFPESSRVLCKFFAHGACLKGEHCEFSHDWNDPPNNICTFYQKGVCAYGSHCRYDHVKASREQSYHTSSSASLHPQNSDSSIHGGTRVTSNGAVTIPELSSHSGPSFPIIPAWNGENEFPIPDSFHAWNPEPKYQEFLEDSDVSESRITDPSERPICSFAAAGNCPRKEKCPFIHGDLCPTCGKHCLHPFRPEEREEHMNTCQRKQKHLEALKRSQEIECSVCLERVLSKLTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTSEEKEEIIESYKEKLKSIDCKHFDFGNGNCPFGTSCFYKHAYRDGRLEEAVLRHLGAADGNTVIAKDIRLSDFFANMHLR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 653 680 IPR000571 GO:0046872
Mibi01g1063 875 MobiDBLite consensus disorder prediction 87 115 - -
Mibi01g1063 875 CDD RING-HC_MKRN 722 780 - -
Mibi01g1063 875 SUPERFAMILY CCCH zinc finger 536 558 IPR036855 GO:0046872
Mibi01g1063 875 CDD RING-HC_MKRN 187 250 - -
Mibi01g1063 875 ProSiteProfiles Zinc finger RING-type profile. 187 250 IPR001841 -
Mibi01g1063 875 PANTHER MAKORIN-RELATED 510 851 IPR045072 GO:0000209|GO:0061630
Mibi01g1063 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 786 IPR013083 -
Mibi01g1063 875 Pfam CCCH-type zinc finger 539 558 IPR041367 -
Mibi01g1063 875 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 534 561 IPR000571 GO:0046872
Mibi01g1063 875 ProSiteProfiles Zinc finger RING-type profile. 722 780 IPR001841 -
Mibi01g1063 875 Coils Coil 796 816 - -
Mibi01g1063 875 Coils Coil 697 717 - -
Mibi01g1063 875 Pfam Zinc finger, C3HC4 type (RING finger) 722 779 IPR018957 GO:0046872
Mibi01g1063 875 Pfam Zinc finger, C3HC4 type (RING finger) 187 249 IPR018957 GO:0046872
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 809 838 IPR000571 GO:0046872
Mibi01g1063 875 Pfam RNA-binding, Nab2-type zinc finger 5 24 - -
Mibi01g1063 875 Pfam RNA-binding, Nab2-type zinc finger 511 530 - -
Mibi01g1063 875 Pfam RNA-binding, Nab2-type zinc finger 284 305 - -
Mibi01g1063 875 Pfam RNA-binding, Nab2-type zinc finger 814 836 - -
Mibi01g1063 875 Pfam RNA-binding, Nab2-type zinc finger 658 678 - -
Mibi01g1063 875 Gene3D - 538 682 - -
Mibi01g1063 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 282 IPR013083 -
Mibi01g1063 875 SUPERFAMILY RING/U-box 710 786 - -
Mibi01g1063 875 SMART c3hfinal6 809 837 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 535 560 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 29 54 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 507 532 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 279 307 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Mibi01g1063 875 SMART c3hfinal6 654 679 IPR000571 GO:0046872
Mibi01g1063 875 Gene3D - 1 67 - -
Mibi01g1063 875 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 119 145 IPR000571 GO:0046872
Mibi01g1063 875 SMART ring_2 722 779 IPR001841 -
Mibi01g1063 875 SMART ring_2 187 249 IPR001841 -
Mibi01g1063 875 SUPERFAMILY CCCH zinc finger 508 531 IPR036855 GO:0046872
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 506 533 IPR000571 GO:0046872
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Mibi01g1063 875 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Mibi01g1063 875 MobiDBLite consensus disorder prediction 567 602 - -
Mibi01g1063 875 MobiDBLite consensus disorder prediction 59 76 - -
Mibi01g1063 875 SUPERFAMILY RING/U-box 177 257 - -
Mibi01g1063 875 Gene3D - 502 537 - -
Mibi01g1063 875 ProSitePatterns Zinc finger RING-type signature. 746 755 IPR017907 -
Mibi01g1063 875 MobiDBLite consensus disorder prediction 59 115 - -
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Mibi01g1063 875 ProSiteProfiles Zinc finger C3H1-type profile. 279 308 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1063 Mibi-ChrMibi01 13929125 13936966 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi01g1063 zf-C3HC4 8.4e-07 CL0229