Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1054 ATGGAAGAGACCGGTCTTTCTCCGATTAATCTTGTTCTACCAAGAGCCCGATTTGTGTCTTGTTGCGTTATTTGCTGCTTTGTGATGGATGACGGAGTGCCTCCGAGCCTTTTTGTTAATGACGGATCATTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAGAAAAATGAAAAATTAGAGGATTCTAAACCTATCAAAATTGTTTCAGGGTCTTTGACTCCTAATCTTTCCGGTAGTAAAAAGACCTCTGCGGACTTGAAGGCTAACACACAGAAATCATCTCAGGCTGTTTCCAGCGGCAAACTTGCATTCAGTATAAAACAAAAGTCAAAGCTAGTGCCTCCACCTGTTAAGTTAAGTGCAGATGATGAAGAAGAAACAGATGCTAATATTGTTTCAAGTGAGGCACCTCTAAAACGACAAAAGTTGGGGCGTGAAGATGGCATTGAGCGGTCATCAAGACAATCTGATGATGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGAGAAACTAGCAAGTTTTGTGGCTAAAAATGGGAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCAGGGAATACACCTTTCAAGTTTTTATTTGACGAGAAATGTGCTGACTACAAATATTATGAATATCGGCTAGCCCAGGAGGAAAAGGCTCTAGTGCAGCCCCAGGAATCAGAGACATCTCACAATGGAGGTACAAGCTCCTCATCTTCTAAACCAACCAATGCTCCTCGGAGATCATCTCAGCAGCATTCAGCTTACCAAATTCCTGCATCTGCTCTGTATGATAGTTCTGAAGATCCTGGAGTTTATGGATCTTCAGGTCAAGCAGCACCAGGAGGAAGTAATAGTGAAACTGGTGGATCATCAAATGCTGATTCATTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAGAAGATGAAAAGACCTAAGCAATCTAAAGATGAGATGCCCCCTCCTGCATCTCTTCAAGCTTCTTCCAAAAAAGGTCATCATATGGGTGATTACATTCCCCTAGAAGAATTAGAGAAGTTCATGGCTACCTGTAATGATGTAGCAGCACAGAAAGCTGCCAAGGAGGCTGCAGAGAAGGCTAAAATTCAGGCTGATAATGTGGGTCACAGGCTTTTGTCAAAAATGGGATGGAGAGAAGGTGAGGGTCTGGGCAGCTCCAGGAGTGGTATTTCAGATCCAATCATGGCTGGTAATGTTAAGATGAACAACTTGGGGGTTGGTGCAAACAACCCTGGGGAGGTGACTCCTGAGGACGACATATACGAACAATACAAAAAGAGGATGATGCTTGGTTATCGTTACAGACCCAATCCCCTGAACAATCCTCGCAAGGCTTATTACTAA 1398 0.4335 MEETGLSPINLVLPRARFVSCCVICCFVMDDGVPPSLFVNDGSFMERFKQLQQEQEKKNEKLEDSKPIKIVSGSLTPNLSGSKKTSADLKANTQKSSQAVSSGKLAFSIKQKSKLVPPPVKLSADDEEETDANIVSSEAPLKRQKLGREDGIERSSRQSDDAPPSPSDPTVKKVAEKLASFVAKNGRQFEDVTRQKNPGNTPFKFLFDEKCADYKYYEYRLAQEEKALVQPQESETSHNGGTSSSSSKPTNAPRRSSQQHSAYQIPASALYDSSEDPGVYGSSGQAAPGGSNSETGGSSNADSLALMEFYMKKAAQEEKMKRPKQSKDEMPPPASLQASSKKGHHMGDYIPLEELEKFMATCNDVAAQKAAKEAAEKAKIQADNVGHRLLSKMGWREGEGLGSSRSGISDPIMAGNVKMNNLGVGANNPGEVTPEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1054 465 ProSiteProfiles G-patch domain profile. 382 429 IPR000467 GO:0003676
Mibi01g1054 465 MobiDBLite consensus disorder prediction 315 344 - -
Mibi01g1054 465 Pfam G-patch domain 383 426 IPR000467 GO:0003676
Mibi01g1054 465 SMART G-patch_5 380 427 IPR000467 GO:0003676
Mibi01g1054 465 SUPERFAMILY Surp module (SWAP domain) 162 227 IPR035967 GO:0003723|GO:0006396
Mibi01g1054 465 Pfam Surp module 174 223 IPR000061 GO:0003723|GO:0006396
Mibi01g1054 465 MobiDBLite consensus disorder prediction 229 268 - -
Mibi01g1054 465 MobiDBLite consensus disorder prediction 117 171 - -
Mibi01g1054 465 MobiDBLite consensus disorder prediction 285 300 - -
Mibi01g1054 465 MobiDBLite consensus disorder prediction 55 95 - -
Mibi01g1054 465 MobiDBLite consensus disorder prediction 142 157 - -
Mibi01g1054 465 MobiDBLite consensus disorder prediction 227 300 - -
Mibi01g1054 465 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 28 465 IPR040169 -
Mibi01g1054 465 SMART surpneu2 172 226 IPR000061 GO:0003723|GO:0006396
Mibi01g1054 465 ProSiteProfiles SURP motif repeat profile. 174 217 IPR000061 GO:0003723|GO:0006396
Mibi01g1054 465 Gene3D Surp module 155 228 IPR035967 GO:0003723|GO:0006396
Mibi01g1054 465 Coils Coil 45 65 - -
Mibi01g1054 465 MobiDBLite consensus disorder prediction 71 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1054 Mibi-ChrMibi01 13830894 13838923 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1054 371 438 C2H2 Transcription Factor Family AT5G26610 40.580 2.41e-08 53.5