Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1010 ATGGAGCTTGATTTGAACGAGGAGCCCTTGGACCAAACCTCTGCTTCAGTGGTTGGATTTGATTCTATATTGGATGAGCTGGAATCAACGCATGAACATATTGAAGAGCGCATTAGGCAACTTGAAGCAGTGACCTTGAGATCTAGGCAGCGTCAAAGGTGGCGACGGGGTCACGATTCAGTTCCTATGAATAATGTCATTGCTGATATGATGATGACACCTAGTGCTCATGATGAGCACAGGATGCCCCAAGAAGATGTTGGCGTTGCAGTCCAGGAAGAAACAGTTGTGTTAGCGGAATTGACAACGAATAATGCTCAAAATGAAGGTAGCTTGCCTAGGGAAGAGGCTGGTGCAGACCAAGAAAGAACAGTCAACAATAGGAAAACGGGTAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATCTAGATGAGGAAGTGAGCACCACTGGGAACTTTTTTGATTGTAATATTTGTCTGGACATGGCAAGGGATCCGATTTTGACATGCTGTGGTCACTTATTCTGTTGGCCATGCTTCTACCAGGTGTCAATTGCGTATTCAAATGTAAGGGAATGCCCTGTTTGTAAGGGAGAGGTCGCAGAAACAGGCATTATTCCAATATATGGAAATAAAGACGACTCTAGCAACCGTCAGTTGGAATTGAAAGAAAGTGGTTTCACTATCCCTCCTCGGCCCCAAGCACGTAGAATTGAGAGTCTCAGACAACAGCTTATAAGCAGGGGAGCATCATCTTCTACAATCCAGGACATTAGGCGATTTATTGGTTCAGCTGCTACTGATAGAACTCGTTTTTCAATCAATCAACCTCCCCTTCCGCAGCTCCAAGCATTACATGGCATGGAGACCGAAGTCAGGCATCATAATCGTTCGCGTCTTCTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTTTCATCCCTTTCATCGGCATTAAATTCTGCAATGGATTCCGCTGAAAGATTAGTTGGAGACCTTGAAGCATATATTCATCCGCAAGAACCTCAACCCATAGGAAGTCCTAGAGAACTGCTAGATCCTTTTTCTAATAACAGAGATTCACCTTCTAGCTTTTCTACCCCAAACCAATTGGGAACACAAACTTCAGATGTTGCTGCAAGCAATTCTGCAGCCAACGCTTCTTTTTCTCCTTTCCATTTAAGTGATGTCGCAACTGCTGTAATGAATTCACGTATCCAGACACAACTTAACAGTGGACAAATTAGTTCAGCAGAGCCTTCTTCATCTTCCAGCAGAGCTGCTGCGATAGGACTTCCAAACCCTTACAATAGAATTTCAAATCGGCGCAGATTGAGAAGGATAAGAAGATGA 1371 0.4391 MELDLNEEPLDQTSASVVGFDSILDELESTHEHIEERIRQLEAVTLRSRQRQRWRRGHDSVPMNNVIADMMMTPSAHDEHRMPQEDVGVAVQEETVVLAELTTNNAQNEGSLPREEAGADQERTVNNRKTGKRNSSHLVAKALGMDPYLDEEVSTTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSIAYSNVRECPVCKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQARRIESLRQQLISRGASSSTIQDIRRFIGSAATDRTRFSINQPPLPQLQALHGMETEVRHHNRSRLLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIHPQEPQPIGSPRELLDPFSNNRDSPSSFSTPNQLGTQTSDVAASNSAANASFSPFHLSDVATAVMNSRIQTQLNSGQISSAEPSSSSSRAAAIGLPNPYNRISNRRRLRRIRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1010 456 MobiDBLite consensus disorder prediction 360 385 - -
Mibi01g1010 456 Pfam zinc-RING finger domain 162 203 IPR001841 -
Mibi01g1010 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 120 317 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mibi01g1010 456 SMART ring_2 162 202 IPR001841 -
Mibi01g1010 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 216 IPR013083 -
Mibi01g1010 456 MobiDBLite consensus disorder prediction 345 385 - -
Mibi01g1010 456 MobiDBLite consensus disorder prediction 417 442 - -
Mibi01g1010 456 SUPERFAMILY RING/U-box 156 211 - -
Mibi01g1010 456 Coils Coil 24 44 - -
Mibi01g1010 456 MobiDBLite consensus disorder prediction 104 124 - -
Mibi01g1010 456 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Mibi01g1010 456 CDD RING-HC_AtRMA_like 160 204 - -
Mibi01g1010 456 MobiDBLite consensus disorder prediction 417 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1010 Mibi-ChrMibi01 13422638 13424008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g1010 116 312 C3H Transcription Factor Family AT3G58030 37.688 8.41e-35 132