Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0996 ATGGTACGTGGGAAGGTTCAGATGAAGAGGATAGAGAACCCAGTGCACAGGCAAGTGACCTTCTGCAAGCGCCGAGCAGGTCTTCTGAAGAAGGCTAAAGAGCTTTCTGTGCTTTGCGATGCTGAAATTGGCCTCCTCATTTTCTCCGCCCACGGCAAGCTCTACGAGTTAGCCACCAAAGGAACAATGCAAGGCCTGTTGGAGAGGTACACCAAGTTCACTCGTGGGGCTCAGCTCCCACCTGAACCTGCCATCAATGAATCATCACATCCTCAGGATGCGAAAGAGGAGATCCATGTGCTGAAACAAGAAATTGGAACTCTGCAAAAGGGTCTCAATTACTTGTTTGGAGGGGGAATCGGAACCATGACGGTGGAGGAATTGCAAGTGTTGGAGAAGTACCTGGAAATGTGGATTTATCAGATTCGTTCAATAAAGATGAATAACATGATACGTGAAATTCAAACTTTGAGGGACAAGGAGGGAATACTCAAAGCTGCAAATAAGTATCTCCAGGATAAGATTGTGGAGAATACTGGAATTACTAACTTTGGACCATTTGCTTACGATACGACTAACCCTTTGATGATACAAGATGAAATATTTCAGTTTTAG 615 0.4488 MVRGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLLIFSAHGKLYELATKGTMQGLLERYTKFTRGAQLPPEPAINESSHPQDAKEEIHVLKQEIGTLQKGLNYLFGGGIGTMTVEELQVLEKYLEMWIYQIRSIKMNNMIREIQTLRDKEGILKAANKYLQDKIVENTGITNFGPFAYDTTNPLMIQDEIFQF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0996 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Mibi01g0996 204 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Mibi01g0996 204 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Mibi01g0996 204 Pfam K-box region 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g0996 204 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g0996 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi01g0996 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0996 Mibi-ChrMibi01 13347180 13351681 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0996 1 204 MADS-box Gene Family AT1G71692 59.242 4.73e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi01g0996 K-box 5.2e-21 No_clan