Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0989 ATGTATGAAAGTTCTCGGGCCAATTTTATGTGCGAGTGCGTCCGGAAAGAGAGAGGTGCTTCTGATAACTCAGGTCTGAAGGAGAAAGAGATAATGGGAAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACAACAAATAGGCAAGTGACTTTCTGCAAGAGAAGGAATGGACTTCTCAAGAAGGCTTATGAGCTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCAGCCGTGGTCGCCTCTATGAATATTCTAACAACAACATAAGGTCGACCATAGAGAGGTACAAGAAGGCGTGTTCAGATAATACGGGTGCAAGCTCTATAACTGAAATCAATGCTCAGTATTATCAGCAAGAATCGGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGACGCGTTGAGCACACTCACTGTAAAAGAACTGAAGCAGCTGGAGAATAGACTCGAACGAGGAATCTCTCGAATCAGATCTAAGAAGCATGAGATGCTGCTGGCAGAAATCGAATACAGGCAGAAAAGGGAGATTGAGCTGGAAAATGAGAATCTCTGCCTTCGGACTAAGATAGGAGAAATGGAGAGGGTGGAGCAGGAAGCAAACATGGTGTCAGGAGAGGATCAGCAGCTGAGTGCGATGCAGCAAGCATTGGCTTCTCGCAATTTCTTCAATCCAACAACCATCATGGAACTCTCTGCCTCTCCTTACCCTCACCCTGACAAGAAGATGCTTCATCTCGGGTGA 780 0.4564 MYESSRANFMCECVRKERGASDNSGLKEKEIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDNTGASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENLCLRTKIGEMERVEQEANMVSGEDQQLSAMQQALASRNFFNPTTIMELSASPYPHPDKKMLHLG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0989 259 Coils Coil 152 175 - -
Mibi01g0989 259 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 SUPERFAMILY SRF-like 33 105 IPR036879 GO:0003677|GO:0046983
Mibi01g0989 259 Coils Coil 118 138 - -
Mibi01g0989 259 FunFam agamous-like MADS-box protein AGL11 44 127 - -
Mibi01g0989 259 ProSiteProfiles K-box domain profile. 118 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g0989 259 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 CDD MADS_MEF2_like 33 106 IPR033896 GO:0000977|GO:0045944
Mibi01g0989 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 Gene3D - 45 107 IPR036879 GO:0003677|GO:0046983
Mibi01g0989 259 Pfam K-box region 117 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi01g0989 259 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Mibi01g0989 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0989 Mibi-ChrMibi01 13268798 13278132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0989 31 259 MADS-box Gene Family AT4G09960 72.222 4.17e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi01g0989 K-box 8.2e-26 No_clan