Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi01g0893 | ATGAGCTACTTTTTGCATTCAATCCCTTCTCTTCTCTACGCAGATTCCCATCCCTTTTTCAACCTTCAAATTCTCCTTCTTCCTCCTCTTCGCGGCAACTCCGTTCAGCAAATTCCTCTCTCTCTCTCTCTCTCTCTCCTCCCTTCAAGAACAAGCAAGATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTTGAGGTCGAGAGTAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACACTTCATTTGGTTTTGAGGCTTAGAGGAGGAACTATGATTAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGGATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGGAAGCAGCTCGCTGATGACAAAACAGCTAAAGAATACAACATTGAAGGTGGTTCTGTGCTTCACCTGGTGCTTGCCCTTAGGGGTGGCAGTCATTAG | 624 | 0.4535 | MSYFLHSIPSLLYADSHPFFNLQILLLPPLRGNSVQQIPLSLSLSLLPSRTSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSH | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi01g0893 | 207 | FunFam | NEDD8 protein | 130 | 207 | - | - | |
| Mibi01g0893 | 207 | ProSitePatterns | Ubiquitin domain signature. | 156 | 181 | IPR019954 | - | |
| Mibi01g0893 | 207 | SUPERFAMILY | Ubiquitin-like | 132 | 205 | IPR029071 | - | |
| Mibi01g0893 | 207 | Gene3D | - | 48 | 130 | - | - | |
| Mibi01g0893 | 207 | Gene3D | - | 131 | 207 | - | - | |
| Mibi01g0893 | 207 | CDD | Ubl_NEDD8 | 132 | 205 | IPR038738 | - | |
| Mibi01g0893 | 207 | ProSitePatterns | Ubiquitin domain signature. | 80 | 105 | IPR019954 | - | |
| Mibi01g0893 | 207 | FunFam | Polyubiquitin 3 | 54 | 129 | - | - | |
| Mibi01g0893 | 207 | SMART | ubq_7 | 130 | 201 | IPR000626 | GO:0005515 | |
| Mibi01g0893 | 207 | SMART | ubq_7 | 54 | 125 | IPR000626 | GO:0005515 | |
| Mibi01g0893 | 207 | ProSiteProfiles | Ubiquitin domain profile. | 130 | 205 | IPR000626 | GO:0005515 | |
| Mibi01g0893 | 207 | ProSiteProfiles | Ubiquitin domain profile. | 54 | 129 | IPR000626 | GO:0005515 | |
| Mibi01g0893 | 207 | PRINTS | Ubiquitin signature | 106 | 127 | IPR019956 | - | |
| Mibi01g0893 | 207 | PRINTS | Ubiquitin signature | 85 | 105 | IPR019956 | - | |
| Mibi01g0893 | 207 | PRINTS | Ubiquitin signature | 64 | 84 | IPR019956 | - | |
| Mibi01g0893 | 207 | SUPERFAMILY | Ubiquitin-like | 45 | 129 | IPR029071 | - | |
| Mibi01g0893 | 207 | PANTHER | UBIQUITIN | 54 | 131 | - | - | |
| Mibi01g0893 | 207 | CDD | Ubl_ubiquitin | 54 | 129 | - | - | |
| Mibi01g0893 | 207 | Pfam | Ubiquitin family | 132 | 203 | IPR000626 | GO:0005515 | |
| Mibi01g0893 | 207 | Pfam | Ubiquitin family | 56 | 127 | IPR000626 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi01g0893 | Mibi-ChrMibi01 | 9259582 | 9262417 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi01g0893 | 132 | 205 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 62.162 | 1.51e-26 | 97.1 |