Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0852 ATGGCCACTTTGTTGAATACTGTATCTCCACCTGCAAACCTATCATCAAAAACAAAAGGGAGCTGTGGATTTAGCTTATATTCCCAGATTCTGAACATCCGTAGGATTTCGCTCAAAAGAGGTTTCCCCAGGGTTCTGGCTTCTACCCAGATGACTACTACTTCAAAAGATGCTGTTTTTACTCTTCCCAATTGGAGAGCAGGGAAGAGTGATCCAAAAAGTAAGGAGCTCAGGCTTAATGATGCATTTCTGTATTTAGAGTATATGGTGGGTAGAGGTCACAAACCAGATGTGGTTCAAGCAACTCAGCTCTTGTATGATCTTTGCAAGGCTAATAAGCTGAGGAAAGCTGTTAGAGTGATGGAGATGATGATAGGTTCAGGTATTATACCTTATTCAGCATCCTGTACATATTTGGTCAATCATTTGTGCAAGAAAGGAAATGTTGGGCATGCGATGCAATTGGTTGAAAAAATGGAGGAACACGGGTTTATAGTTAATACTATCACCTATAATACTCTAGTTAAAGGGCTTTGCATGCAGGGGAGTTTAAACAAGAGCTTGCAGCTTATGGATAGATTAACAAAGAAAGGATTGGTCCCAAACGCTTTCACCTATTCTTTCTTGCTTGAAGCTGCTTATAAGGAGAGGGGAGTGGATGAAGCCATGAAACTTTTAGATGAGATAATTGCCAAAGGTGGGGAGAGTAATTTGATTAGTTACAATGTTATATTAACTGGGTTGTGCAAGGAAGGTAGAACTGAAGAAGCCTTTAAGCTGTTCAGGGAATTGCCTGCAAAGGGGTTTGATCCTAGTGTTGTTAGCTATAACATTTTGCTGAGGAATTTGTGCTATGAAGGGCGGTGGGATGAGGCGAATGAGTTATTGGCAGAGATGTATGAAGAGGATCAGTCTCCCTCTGTGGTTACCTACAACATATTAATTACTTCTCTTGCCCTCCATGGAAGAATAGAACATGCTTTCAAGGTTTTGGATGAAATGACAAAGAGTGGATTTAAGGCAACTGCCACTAGCTATAATCCAATTATCGCTCATCTCTGCAAGGAAGGTAAGGTTGATCTTGTAGTTCAGTGTCTGGACCAAATGATTTTTCGGCACTGTAGTCCTAATGAAGGAACATACAATGCTATAGCTATGCTTTGTGAGGGAGGGAAAGTGCAGGAAGCATTCTCCATAATTCAAAGCTTGGGTAATAAACAAAACGCCTCTATGCATGATTTCTACAAAAATGTGCTTTGGAGCATGTGTAGGAAAGGAAACACATATCCAGCCTTTCAAATATTATATGAAATGACAAAGTATGGGTTCAGGCCAGATTCTAATACTTACTCATCTTTAGTTAGAGGGATGTGTAGGGAAGGAATGTTTGGTGGAGCTATTGAGATATTCAGGATTTTGGAAGAAAGTGGGCACCAACCTGATACTGATAATTATAATGCACTTTTCCTTGGCCTTTGTAAATCTCATAGAACAGACTTGTCACTGGAGATATTTCAGATGATGGTTGATAAAGGATGTATGCCTAATGAAGTAACGTATTCCACTCTAATTGAAGGGCTTGCTTCGGAAGATGAAATGGATATGGCAGCCAAGCTTTTGAAAGAGTTGCATCACAAGAAGGTCCTTAGCCAAAGTACTGCAGAGAGAATTGTTATGCAGTATGACCTCCAGGATTTGGGAGATTAG 1707 0.4025 MATLLNTVSPPANLSSKTKGSCGFSLYSQILNIRRISLKRGFPRVLASTQMTTTSKDAVFTLPNWRAGKSDPKSKELRLNDAFLYLEYMVGRGHKPDVVQATQLLYDLCKANKLRKAVRVMEMMIGSGIIPYSASCTYLVNHLCKKGNVGHAMQLVEKMEEHGFIVNTITYNTLVKGLCMQGSLNKSLQLMDRLTKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDEIIAKGGESNLISYNVILTGLCKEGRTEEAFKLFRELPAKGFDPSVVSYNILLRNLCYEGRWDEANELLAEMYEEDQSPSVVTYNILITSLALHGRIEHAFKVLDEMTKSGFKATATSYNPIIAHLCKEGKVDLVVQCLDQMIFRHCSPNEGTYNAIAMLCEGGKVQEAFSIIQSLGNKQNASMHDFYKNVLWSMCRKGNTYPAFQILYEMTKYGFRPDSNTYSSLVRGMCREGMFGGAIEIFRILEESGHQPDTDNYNALFLGLCKSHRTDLSLEIFQMMVDKGCMPNEVTYSTLIEGLASEDEMDMAAKLLKELHHKKVLSQSTAERIVMQYDLQDLGD 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0852 568 Pfam PPR repeat family 237 284 IPR002885 -
Mibi01g0852 568 Pfam PPR repeat family 344 384 IPR002885 -
Mibi01g0852 568 Pfam PPR repeat family 480 528 IPR002885 -
Mibi01g0852 568 Pfam PPR repeat family 167 212 IPR002885 -
Mibi01g0852 568 Pfam PPR repeat family 415 459 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Mibi01g0852 568 Pfam PPR repeat 305 335 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Mibi01g0852 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 175 405 - -
Mibi01g0852 568 Gene3D Tetratricopeptide repeat domain 73 183 IPR011990 GO:0005515
Mibi01g0852 568 Gene3D Tetratricopeptide repeat domain 384 565 IPR011990 GO:0005515
Mibi01g0852 568 Gene3D Tetratricopeptide repeat domain 184 302 IPR011990 GO:0005515
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Mibi01g0852 568 SUPERFAMILY HCP-like 83 306 - -
Mibi01g0852 568 Pfam PPR repeat 108 129 IPR002885 -
Mibi01g0852 568 Pfam PPR repeat 135 164 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 485 517 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 449 482 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 518 548 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 135 167 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Mibi01g0852 568 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Mibi01g0852 568 Gene3D Tetratricopeptide repeat domain 303 370 IPR011990 GO:0005515
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Mibi01g0852 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0852 Mibi-ChrMibi01 8459554 8461260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0852 76 565 Glycosyltransferase AT1G05670 26.305 1.31e-47 175
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0852 01 8459554 8461260 Mibi01g0852 01 8459554 8461260 ECH