Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0724 ATGAGCTTCTCCAGGTTCTACGAGTCATGGTTCGAGCAGCTACACCAGCTGCTCCACCAGCTCTCCGCCGCCACACGGCCACCGTGCACGGCGGAGGACAACCAGAAGCTGAAGATGGTGATAGAGAAAGTGATGGGGCACTACGAGGAGTACTACCGAAGCAAGTCCCTGGCCTCCCAGAGGGAGCCACTCCAAGTGCTGCTCTCCCCATGGTCCACCACCCTGGAACGCTCCCTCCACTGGATCGCCGGCTGGCGCCCCACCATCGCCTTCCACCTCGTCTACACCGAGTCCTCCGTCCTCTTCGAGTCCCACATCATCGACATCCTCCGTGGCGTCCGCACCGGCGACCTCGGCGACCTCTCCCCCTCCCAGTTCCGCCGTGTCAGCCACCTCCAATGTGACACCGTGAAGGAGGAGAATGGGATAACGGAGGAGATGTCGGACTGGCAGGAGAGAGGGAGTGAGGTGATAGAGATGGAGGAGATGGAGGAGAAGATGGAGGCTCTTGGGAGGATCATAAGGAAGGCTGATGATTTGAGGCTTAGGACACTTAAGAGTGTGGTCGCTCTCCTCACTCCCCAGCAGGCCGTCGACTTCCTCATCGCCTCCGCCGAGTTGCTCTCCGGCATCCGCTCTTGGGGTCTCAATCACGACCGAGAAGGTAGTGCAGCATGCAGGGCGACACTTAGCAAGTCAACGTGGAAAATTCTCCAACGTGACTTAATGTTACAAATTAAAATCAAAGGGGGCATTATAAAAGAGACTGTACACCATACCCACATCCTTTCTCCTCTCTCTGGAATGTCTCTCATAAGGGTTTTTCGTTCTCGGAAGTTCTCCAGATCCTTCAGGGGAAGTGGGTCTCTCGATGAGGACGACCGGAGGAACGGGATCGGTGCTGACGTGGACCCTCCGTACGGCAATGCGTGGTCGACTATGTTGCCGGAGCTTCTCGGAGAGATCATACGGAGGGTGGAGGTCACCGAGGAGAGGTGGCCCCACCGCCAAAACCTCGTCGCCTTTGCCGGCGTCTGCAAGAGGTGGAGGGACATGACTCGTCAGATCGTACGGTCCCCTTCTCATGCCTGCAAAATTACTTTCCCTTCTTGTCTCAGAGAGCCAGGGCCACGTGATTCACCCCACCAATGTCTTATTAAGCGAAACAAGAGGACTTCGACGTTTTACCTATATCTTGCCCTTACACCATCTTTCACAGATAAAGGGAAGTTTCTCTTAGCTGCTAGGAGATATAGGCGTGGTGCTAATACTGAATATATCATATCACTTGATGGTGAAGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGCTCGGATTTTCTGGGCACCAACTTCACAATCTACGACAGCCAGCCACCCCATAATGGCGCAAAGCCATCTAGCAGCAGGGCAAGCCGTAGATTTACCAGCAAGCAGATAAGCCCACAAGTTCCTGCTGGTAACTTTGAGGTGGGACAGGTCTCATACAAGTTCAATATCTTGAAATCAAGGGGGCCACGAAGGATGGCTTGCACAATGAAGTGCCCATTTCCTTTGTCTGGAGAAAGTTCAGAAAACAAAAATCTGGATGCCGCTGATAAGACAAATGATAAAGAACATGTGGTCGCTCCTCCTGGCTACTCGATATTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAGTGTTGGTGCTTGAATTTCCACGGTCGTGTGACGGTAGCGTCAGTGAAGAATTTTCAGCTGGTTGCCACTTTGGACCAGAGCCAACCAGGCGGAAAAGGAGATGAGGAAACAGTTCTCCTGCAGTTTGGCAAGGTTGCGGATGATACTTTCACCATGGATTATAGGCAGCCCTTGTCAGCCTTCCAGGCTTTTGCCATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTAG 1932 0.528 MSFSRFYESWFEQLHQLLHQLSAATRPPCTAEDNQKLKMVIEKVMGHYEEYYRSKSLASQREPLQVLLSPWSTTLERSLHWIAGWRPTIAFHLVYTESSVLFESHIIDILRGVRTGDLGDLSPSQFRRVSHLQCDTVKEENGITEEMSDWQERGSEVIEMEEMEEKMEALGRIIRKADDLRLRTLKSVVALLTPQQAVDFLIASAELLSGIRSWGLNHDREGSAACRATLSKSTWKILQRDLMLQIKIKGGIIKETVHHTHILSPLSGMSLIRVFRSRKFSRSFRGSGSLDEDDRRNGIGADVDPPYGNAWSTMLPELLGEIIRRVEVTEERWPHRQNLVAFAGVCKRWRDMTRQIVRSPSHACKITFPSCLREPGPRDSPHQCLIKRNKRTSTFYLYLALTPSFTDKGKFLLAARRYRRGANTEYIISLDGEDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFTSKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMACTMKCPFPLSGESSENKNLDAADKTNDKEHVVAPPGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATLDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0724 643 MobiDBLite consensus disorder prediction 460 482 - -
Mibi01g0724 643 Gene3D Tubby Protein; Chain A 367 643 IPR025659 -
Mibi01g0724 643 MobiDBLite consensus disorder prediction 283 302 - -
Mibi01g0724 643 SUPERFAMILY Tubby C-terminal domain-like 361 643 IPR025659 -
Mibi01g0724 643 MobiDBLite consensus disorder prediction 285 300 - -
Mibi01g0724 643 Pfam F-box domain 316 357 IPR001810 GO:0005515
Mibi01g0724 643 Pfam Seed dormancy control 16 96 IPR025422 GO:0006351|GO:0043565
Mibi01g0724 643 Pfam Tub family 372 638 IPR000007 -
Mibi01g0724 643 ProSiteProfiles DOG1 domain profile. 1 221 IPR025422 GO:0006351|GO:0043565
Mibi01g0724 643 PANTHER TUBBY-RELATED 309 641 - -
Mibi01g0724 643 Coils Coil 160 180 - -
Mibi01g0724 643 PRINTS Tubby superfamily signature 426 442 IPR000007 -
Mibi01g0724 643 PRINTS Tubby superfamily signature 600 619 IPR000007 -
Mibi01g0724 643 PRINTS Tubby superfamily signature 553 570 IPR000007 -
Mibi01g0724 643 PRINTS Tubby superfamily signature 621 643 IPR000007 -
Mibi01g0724 643 PRINTS Tubby superfamily signature 571 587 IPR000007 -
Mibi01g0724 643 PRINTS Tubby superfamily signature 442 466 IPR000007 -
Mibi01g0724 643 PRINTS Tubby superfamily signature 491 518 IPR000007 -
Mibi01g0724 643 ProSitePatterns Tub family signature 1. 571 584 IPR018066 -
Mibi01g0724 643 ProSitePatterns Tub family signature 2. 628 643 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0724 Mibi-ChrMibi01 6927718 6934368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0724 269 643 TUB Transcription Factor Family AT1G53320 70.130 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi01g0724 Tub 8.9e-102 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0724 01 6927718 6934368 Mibi01g0724 01 6927718 6934368 ECH