Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0650 ATGTTGCAGCGTGCATGGGTGATGGAGCTGGTCTCATGCTCGAGAGAGAAGAATATTGTAGCTGATATTTTAGTAGGAGAAGCTAAGGAGATGCAAGTGGATTTCCTCTGTTTATTATCACCGCCAGACAGCATTCTAGAAGCTTTGAAAGAGGGTATAGTTTTACCTCTCGTTGTTAACTCCATTAGAATTACGGAGTCCAAAATGCGTCACCGGCGAAACTTCTTCCGGCCATGGTTTTCTCCGGCCAATGCTGAACCTACCCATTTCATGAAGATCATACTTCCGCCAACCATTCATTCCCAAAACATGAGAATTCCAAATGAGTTTGTTAGAAGATTTGGGAATGAACTGTCCACTAGTGAGGCAACGATTTGTGTTCCAGATGGTTGTGTCTGGAAGTTGGAGATGAAAAAACCTGAGAACGAAGTCTGGTTCTGCAAGGGTTGGGAGGAGTTTGTGAAATACTACTCTCTTAGTTTTGGCTTTTTTTTAGTGTTCAACTATGAAGCCAATTCACGATTCAGTGTGGTGATCTTTGATTCAAGTGCTACTGAGATTCGCTATCCACGCAAACTTAACCCTCAGAAGCAGAACTCGGTAGTAAGTAAACGTCGTAAAAAAAGGCCATACAGTTTTGATCATTGTGGTTATAAGACAAGAAGCCAGAAGCAGAAGCTGGTAGATGAAGAAGAAATAATTGACATAGAAGATGAGAATGCATTAACCCATGGTAAATCAGGAACAAGTGATAGAACTGGGCAAGAAGAATTTGATAATTCAAGAAGGCATGAGAAAGAGAAAGATAAGTGTGGGCAAAGGCTTTATTTCAAAATGAGGAAGAGAGCTTTGAGTAAAAGGCAAAGAGGTGTGGAAGCTGCCCAGAATTCCAAACCAGCAAATCCTCCATCCTTCCCTGCAACAATAACGCCAGCTAATCTGAATCGTTATGTGGATGTGCCGGCATTTTTTTGGAGGGAGTATATGGGAAAAATGCGTCCTATGAAGCTGGAGGATAGTGAGGGACGAAAATGGAAGGTCACTTATTTTAAATGTGCGTCATCTATCAGAATTGGGAAGGGTTGGAGCAGTTTCGCAAGGGCCAACAGTGTGAAGGAAGGAGACAAGTGTGTGTTTGAGCTTATCAAATGGAGCAAGAACTTTGTATTTCGAGTTACCATATTTCAAACTAGGAATAGAGCTCTGACTCTGAGTAAAAGTCAAAGAGCTGTGGAAGCTGCCAAGAATTTCAAGCCAGATGATGAAAATCTATCTTTTACTGCAATAATAAAGCCACCAAATCTGATTCGTCATTACATGGATGTGCCGGCTACATTTGCAAGAGATTATATGGGGAAAGCTGATAGTGTGAGGCTGCAGGATTGTAATGGAAAGAGATGGATGGTTAATTGTAGTAAAAGTGCTTCAAAGTCAGGTGTTCGAATGTGGGGGGGCTGGATTGATTTCGCAAGGGCCAACAATCTGAAGGAAGGAGACGTCTGCTTCTCTGTCTCACTCATCTTTTGTGTCGTCTACCACATCCTCTACAGCTTCTTCTACCGCCTCATCGTCACAAGGTATTATCATAATCACCGCCGCCACGTCATGGACGTCGAAGAAGGAACATATCGAATGCCCGGAAACTCTGAGGGATGGGTGATGGTGGGAGCTTTAATGGAGGAGGGAAGAGGGGAAACTCTGAGGGCAATGAGGAAATTGCCTGCATTGGTGAAGTATGGAGGGAAAGAGCATGAAGGAACCAGAAAATGTGAGGATTGTGCGATATGCTTAGAGGATTTTAAGGTTGGAGATATGTGTCAGGTATTTCCTAGATGCAATCATGTGTTTCATTCCAAATGCATTGATGGTTGGTTGGCCACGAAGCTAACGTGCCCAACTTGTCGGAGTTACATTATTGCGTAA 1923 0.4295 MLQRAWVMELVSCSREKNIVADILVGEAKEMQVDFLCLLSPPDSILEALKEGIVLPLVVNSIRITESKMRHRRNFFRPWFSPANAEPTHFMKIILPPTIHSQNMRIPNEFVRRFGNELSTSEATICVPDGCVWKLEMKKPENEVWFCKGWEEFVKYYSLSFGFFLVFNYEANSRFSVVIFDSSATEIRYPRKLNPQKQNSVVSKRRKKRPYSFDHCGYKTRSQKQKLVDEEEIIDIEDENALTHGKSGTSDRTGQEEFDNSRRHEKEKDKCGQRLYFKMRKRALSKRQRGVEAAQNSKPANPPSFPATITPANLNRYVDVPAFFWREYMGKMRPMKLEDSEGRKWKVTYFKCASSIRIGKGWSSFARANSVKEGDKCVFELIKWSKNFVFRVTIFQTRNRALTLSKSQRAVEAAKNFKPDDENLSFTAIIKPPNLIRHYMDVPATFARDYMGKADSVRLQDCNGKRWMVNCSKSASKSGVRMWGGWIDFARANNLKEGDVCFSVSLIFCVVYHILYSFFYRLIVTRYYHNHRRHVMDVEEGTYRMPGNSEGWVMVGALMEEGRGETLRAMRKLPALVKYGGKEHEGTRKCEDCAICLEDFKVGDMCQVFPRCNHVFHSKCIDGWLATKLTCPTCRSYIIA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0650 640 ProSiteProfiles B3 DNA-binding domain profile. 425 526 IPR003340 GO:0003677
Mibi01g0650 640 CDD B3_DNA 303 395 IPR003340 GO:0003677
Mibi01g0650 640 Pfam Ring finger domain 592 635 IPR001841 -
Mibi01g0650 640 ProSiteProfiles B3 DNA-binding domain profile. 89 183 IPR003340 GO:0003677
Mibi01g0650 640 CDD B3_DNA 425 501 IPR003340 GO:0003677
Mibi01g0650 640 Pfam B3 DNA binding domain 90 182 IPR003340 GO:0003677
Mibi01g0650 640 Pfam B3 DNA binding domain 429 501 IPR003340 GO:0003677
Mibi01g0650 640 Pfam B3 DNA binding domain 317 396 IPR003340 GO:0003677
Mibi01g0650 640 SMART B3_2 305 398 IPR003340 GO:0003677
Mibi01g0650 640 SMART B3_2 90 183 IPR003340 GO:0003677
Mibi01g0650 640 SMART B3_2 426 517 IPR003340 GO:0003677
Mibi01g0650 640 CDD B3_DNA 89 181 IPR003340 GO:0003677
Mibi01g0650 640 CDD RING-H2_PA-TM-RING 592 635 - -
Mibi01g0650 640 SUPERFAMILY DNA-binding pseudobarrel domain 420 502 IPR015300 -
Mibi01g0650 640 MobiDBLite consensus disorder prediction 239 272 - -
Mibi01g0650 640 SMART ring_2 593 634 IPR001841 -
Mibi01g0650 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 639 IPR013083 -
Mibi01g0650 640 Gene3D - 82 184 IPR015300 -
Mibi01g0650 640 SUPERFAMILY DNA-binding pseudobarrel domain 85 183 IPR015300 -
Mibi01g0650 640 PANTHER B3 DOMAIN-CONTAINING 402 502 - -
Mibi01g0650 640 SUPERFAMILY DNA-binding pseudobarrel domain 301 396 IPR015300 -
Mibi01g0650 640 SUPERFAMILY RING/U-box 578 638 - -
Mibi01g0650 640 MobiDBLite consensus disorder prediction 290 307 - -
Mibi01g0650 640 Gene3D - 402 510 IPR015300 -
Mibi01g0650 640 Gene3D - 283 399 IPR015300 -
Mibi01g0650 640 MobiDBLite consensus disorder prediction 287 307 - -
Mibi01g0650 640 ProSiteProfiles B3 DNA-binding domain profile. 335 398 IPR003340 GO:0003677
Mibi01g0650 640 ProSiteProfiles Zinc finger RING-type profile. 593 635 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0650 Mibi-ChrMibi01 6233449 6238065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0650 397 501 B3 DNA Binding Superfamily AT3G18990 35.514 3.44e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi01g0650 B3 3.3e-12 CL0405