Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0649 ATGCGTCACCGGCGAAACTTCTTCCGGCCATGGTTTTCTCCGGCCAATGCTGAACCTACCCACTTCATGAAGATCATACTTCCGCCAACCATTCATTCCCAAAACATGAGAATTCCAAATGAGTTCGTGAGAAGATTCGGTAATGAACTTTCTACTAGTGAGGCAACAATTTGTGTTCCAGATGGTCGTGTCTGGAAGTTGGAGATGAAGAAATCTGAAAACGAAGTCTGGTTCTGCAAGGGTTGGGAGGAGTTTGTGAAATACTACTCTCTTAGTTTCGGCTTCTTTTTAGTTTTTAACTATGAAGGAAATTCACGATTCAGTGTGGTGATCTTTGATTCAAGTGCTACTGAGATTCGCTATCCACGCAAACTTGACCCTCAGAAGAAGGCCTCAGTAGTGACTAAATGTGGCAGAAAAAGGCCATACAGCTTTGATCATTGTGGCAACAAGACAAGGAGCCAGAAGCAGAAGATAGAAGATGAAGCAGAAATAATTGATATAGAAGATGAGAATGCATTAACCCATGGTAAATCTGGAAAAAGTGATAGAACTGGGCAAGAAGAAATTGATAGTTCAAGAAGGCATGAGAAAGAGAAAGATTGGTCTGGGCAAGGGCTTTCTTTCAAAATGAGGAAGACAGCTTTGAGTAAAAGGCGAAGAGCTATGGAAGCTGCCCAGAATTTCAAACTAGGAAATGAAAACATATCCTTTACTGCAATAATAAAGCCACCAAATCTGAATCGTCGTTACATGGATGTGCCGGCTACATTTGCGAGAGCTTATATGGGGAAAATTGATTGTGTGAAGCTGCAGGATTGTAATGGAAAGAGATGGTTGGTTAATTGTAGTAAAAGGGCTTCAAGTTCACGTGTTCGAATGTTGGGAGGCTGGATTGACTTCGCAAGGGCCAACAATCTGAAGGAAAGAGATGTCTGTGTTTTCGAGCTCATCCAAGAGAAGGATCTTGTATTCGAAGTTACCATATTTCGAGCTTATCGTCGGTCTGTACAAGGACTTTGTTCCAAAATGAGGGAGAGAGCTCTGAGTAAAAGTCAAAGAGGTATGGAAGCTGCCCAGAATTTCAAATCAGAAAATCCTCCATCATTCACTGCAACAATAACGCCACCAAATCTGAAAAACCGTTATATGGATGTGCCGGCATTGTTTTGGAGGCAGTATATGGGAGAAATGCGTCCTATGAAGCTGGAGGATAGTGAAGGACGAGAATGGAAGGTCAACTATTTTAAACTTGGGTCATCTATCAGAATAGCGAAGGGTTGGATCAGTTTCGCAAGGGCCAACGATGTGAAGGAAGGAGACAAGTGTGTGTTTGAGCTTATCAAATGGAACAGGAGCTTCGTATTTCAGGTTACCATATTTGCTTGTTGA 1392 0.421 MRHRRNFFRPWFSPANAEPTHFMKIILPPTIHSQNMRIPNEFVRRFGNELSTSEATICVPDGRVWKLEMKKSENEVWFCKGWEEFVKYYSLSFGFFLVFNYEGNSRFSVVIFDSSATEIRYPRKLDPQKKASVVTKCGRKRPYSFDHCGNKTRSQKQKIEDEAEIIDIEDENALTHGKSGKSDRTGQEEIDSSRRHEKEKDWSGQGLSFKMRKTALSKRRRAMEAAQNFKLGNENISFTAIIKPPNLNRRYMDVPATFARAYMGKIDCVKLQDCNGKRWLVNCSKRASSSRVRMLGGWIDFARANNLKERDVCVFELIQEKDLVFEVTIFRAYRRSVQGLCSKMRERALSKSQRGMEAAQNFKSENPPSFTATITPPNLKNRYMDVPALFWRQYMGEMRPMKLEDSEGREWKVNYFKLGSSIRIAKGWISFARANDVKEGDKCVFELIKWNRSFVFQVTIFAC 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0649 463 CDD B3_DNA 368 458 IPR003340 GO:0003677
Mibi01g0649 463 SUPERFAMILY DNA-binding pseudobarrel domain 17 115 IPR015300 -
Mibi01g0649 463 CDD B3_DNA 21 113 IPR003340 GO:0003677
Mibi01g0649 463 CDD B3_DNA 237 331 IPR003340 GO:0003677
Mibi01g0649 463 Pfam B3 DNA binding domain 370 461 IPR003340 GO:0003677
Mibi01g0649 463 Pfam B3 DNA binding domain 239 332 IPR003340 GO:0003677
Mibi01g0649 463 Pfam B3 DNA binding domain 22 114 IPR003340 GO:0003677
Mibi01g0649 463 MobiDBLite consensus disorder prediction 174 204 - -
Mibi01g0649 463 SUPERFAMILY DNA-binding pseudobarrel domain 365 461 IPR015300 -
Mibi01g0649 463 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Mibi01g0649 463 SMART B3_2 370 462 IPR003340 GO:0003677
Mibi01g0649 463 SMART B3_2 238 333 IPR003340 GO:0003677
Mibi01g0649 463 SMART B3_2 22 115 IPR003340 GO:0003677
Mibi01g0649 463 ProSiteProfiles B3 DNA-binding domain profile. 369 463 IPR003340 GO:0003677
Mibi01g0649 463 Gene3D - 215 334 IPR015300 -
Mibi01g0649 463 Gene3D - 349 463 IPR015300 -
Mibi01g0649 463 PANTHER B3 DOMAIN-CONTAINING 360 451 - -
Mibi01g0649 463 Gene3D - 14 116 IPR015300 -
Mibi01g0649 463 ProSiteProfiles B3 DNA-binding domain profile. 237 333 IPR003340 GO:0003677
Mibi01g0649 463 SUPERFAMILY DNA-binding pseudobarrel domain 233 332 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0649 Mibi-ChrMibi01 6228026 6229954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0649 338 461 B3 DNA Binding Superfamily AT3G18990 28.571 8.76e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi01g0649 B3 2.1e-17 CL0405