LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g0591	ATGGCGGAAGATCAATTCCAAGCCACTGGAAACTGGTGGGACTCTGCCAGAAACTCCACCAGGTTCGAAACTGAGGCCTCTCAATCTTCTTCCTCCATCCCCAACTTTGCCTGGCAACACACAGACATGTCTTCTCATGAGCTCAAGCCAAGGTCTTCCATGGCGGCTTCATCTCCTTCCTCCTCCGACCCCAACTTGCACATGATGGGTCTAGGCCTCTCTTCTCAACCTCTGGACTGGAATCAGCCTTCCTTTCTTCGAGGGACAGAGAAAGGTGGGGAGAGCAGTTTCTTGAACTCATCCAGCACTAATTTTCACCAAGAAAGTGGGATGGGTTTGTCTCAAGTTCAATGGAGGGACAAGTTGTTTTCTGCAGAGTCTTCTTCTTCAACAAACGAGTTCAAACAAGTGAACAGGGGTTTCTCTTTGGATCAAACTCAGTTTAGTCCTCAATATAGTTCTGGGGATAGTACTGTGACCACCCAAGGCTTAGCTTCTAGTACTAACTTTCATCACATGGATTTGTATGGTAACTCATCCATATTACAAGGACTATTAGGATCTGATCATCATAATAATACTAACAACCAAGTCCAGTATGATCACCATCAGAATCGCCAGATAAACCTGCCATACCAGACAAGCTATGGATTGAACAGTAACGATCAGTTAATGCCTTTCACAAATAAAGTTCCTCAATTTCTGAGAGCTTCACCTCCAAAACAACAACCACCACCACCACACCATAATAACAACCAGTTGCATTTCACAAATAACGCTCCTTTCTGGAACGCTTCTGAGGCCTCCAACATTAAAGACGTTAGACCTGGCTTCTTTCCCTCTTTGCAGCCTCCATTCCCTTCTCCAAGCTTCGATGTTCAGCCCAAGAATATGTGTGAGGTTAGGGAGCCGAGTGGAGTGGTGAGGAAAAGTGGGAGCGAGGTAACAACCAAAAGGCCTCGTAACGAAACTCCGTCTCCTATGCCAGCGTTTAAGCAGGTAAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTTCAACAATTAGTTTCGCCTTTCGGAAAGACGGATACAGCCTCGGTGCTATCTGAAGCCATTGAGTACATCAAATTTCTCCATGAACAAGTGACAGTTTTAAGCACACCGTATATGAAAAGTGGAGCTCCCATACAGCATCAACAGAGTACTGGTAAATCTAAAGAGGGGGAGGGTGGAAAGCAAGATCTGAGAAGCAGAGGGCTATGTCTGGTGCCAGTGTCGAGTACATTTCCAGTGACTCAAGAAACAACAGTTGATTTTTGGACGCCAACATTCGGAGGAACATTCAGATAA	1332	0.4557	MAEDQFQATGNWWDSARNSTRFETEASQSSSSIPNFAWQHTDMSSHELKPRSSMAASSPSSSDPNLHMMGLGLSSQPLDWNQPSFLRGTEKGGESSFLNSSSTNFHQESGMGLSQVQWRDKLFSAESSSSTNEFKQVNRGFSLDQTQFSPQYSSGDSTVTTQGLASSTNFHHMDLYGNSSILQGLLGSDHHNNTNNQVQYDHHQNRQINLPYQTSYGLNSNDQLMPFTNKVPQFLRASPPKQQPPPPHHNNNQLHFTNNAPFWNASEASNIKDVRPGFFPSLQPPFPSPSFDVQPKNMCEVREPSGVVRKSGSEVTTKRPRNETPSPMPAFKQVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSTGKSKEGEGGKQDLRSRGLCLVPVSSTFPVTQETTVDFWTPTFGGTFR	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g0591	443	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	330	390	IPR036638	GO:0046983
	Mibi01g0591	443	MobiDBLite	consensus disorder prediction	387	409	-	-
	Mibi01g0591	443	MobiDBLite	consensus disorder prediction	236	257	-	-
	Mibi01g0591	443	Gene3D	-	329	395	IPR036638	GO:0046983
	Mibi01g0591	443	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	323	372	IPR011598	GO:0046983
	Mibi01g0591	443	MobiDBLite	consensus disorder prediction	1	111	-	-
	Mibi01g0591	443	MobiDBLite	consensus disorder prediction	1	83	-	-
	Mibi01g0591	443	CDD	bHLH_AtbHLH_like	332	380	IPR045239	-
	Mibi01g0591	443	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	97	424	-	-
	Mibi01g0591	443	MobiDBLite	consensus disorder prediction	305	329	-	-
	Mibi01g0591	443	SMART	finulus	329	378	IPR011598	GO:0046983
	Mibi01g0591	443	FunFam	Transcription factor bHLH123 family	333	395	-	-
	Mibi01g0591	443	MobiDBLite	consensus disorder prediction	93	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g0591	Mibi-ChrMibi01	5621774	5623757	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g0591	254	443	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G20640	63.819	1.64e-73	234