LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g0564	ATGAAGGGTGAATCAACAGGACTGATAATTGGGATTTCAATTGGCGTAGTGATTGGCGTGATTTTGGCTATTTCTGCACTTTTGTGTGTGAGATACCATAGGAGGAGATCACAGATTGGAAATAGCAGTTCAAGGAGGGCGGCTACTATACCCATCCGTACAAATGGTGCTGATTCTTGTAACATCCTATCTGACTCAACCTTAGGCCCAGAATCTCCTGTTAAGTCTGGTCGTAGTGCCATGTCCTTCTGGTTTGATGGCTTCAAGAGAAACAACGTTGTTTCAGCTTCTGGAATACCCGAATATCCTTACAAGGATTTGCAGAAGGCGACCGGTAACTTTACAACACTTCTAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCACATGTCCACCGGTGAGACCGTTGCAGTTAAAGTTCTGGCAACTAACTCTAAGCAAGGGGAGAGAGAATTTCATGCAGAGGTGATGTTATTGGGAAGACTGCACCATCGAAACCTGGTTAATTTGGTTGGATATTGCGCAGAGAAGGGACAGCATATTCTTGTATATGTCTATATGAGCAACGGCAGCTTAGCTTCCCACTTGTACAGTAAGGAGAATGGAGGGATGAGCTGGGATTTGAGAGTTCACATTGCTCTAGATATAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCAGTAATCCACAGAGATATCAAGTCTTCTAACATTTTGCTAGACCAGTCCATGAGAGCCAGGGTAGCTGATTTTGGACTGTCAAGAGAAGAGAAGGTAGACAAGCAAGCAGCCATAAGAGGAACATTTGGGTATCTAGACCCAGAGTACATATCCTCTGCAACATTCACTAAGAAAAGTGATGTGTACAGTTATGGAGTGTTGCTTTTTGAACTCATAGCAGGCAGAAATCCTCAACAAGGTCTCATGGAATTGGTTGAGCTGGCGGCGATGAACAGTGAGGGGAAAATGGGGTGGGAGGAGATAGTGGACTCTGCATTAGAAGGAGAATATGATGGAGAGGAGTTGAATGAGGTAGCAGGACTTGCATATAAGTGCATAAACCGAGCCCCAAGGAAGAGACCTTCCATGAGAGACGTGGTTCAAGTGCTCACAAGGATTCTTAAAACAAGAAATGGTCAAAAGCGTCACAGAAAGGAATTGTCTGCTACGGCAGATGAAGTTTCCATTGATGTGGATCACCCTCAAGCAAGGATTCATCGCAGAGAAGAATCTATGGATAGTACAGCTGACACCTATGAAGTATGA	1278	0.4444	MKGESTGLIIGISIGVVIGVILAISALLCVRYHRRRSQIGNSSSRRAATIPIRTNGADSCNILSDSTLGPESPVKSGRSAMSFWFDGFKRNNVVSASGIPEYPYKDLQKATGNFTTLLGQGAFGPVYKAHMSTGETVAVKVLATNSKQGEREFHAEVMLLGRLHHRNLVNLVGYCAEKGQHILVYVYMSNGSLASHLYSKENGGMSWDLRVHIALDIARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEKVDKQAAIRGTFGYLDPEYISSATFTKKSDVYSYGVLLFELIAGRNPQQGLMELVELAAMNSEGKMGWEEIVDSALEGEYDGEELNEVAGLAYKCINRAPRKRPSMRDVVQVLTRILKTRNGQKRHRKELSATADEVSIDVDHPQARIHRREESMDSTADTYEV	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g0564	425	FunFam	Calcium/calmodulin-regulated receptor-like kinase 1	86	187	-	-
	Mibi01g0564	425	Gene3D	Phosphorylase Kinase; domain 1	86	187	-	-
	Mibi01g0564	425	CDD	STKc_IRAK	118	377	-	-
	Mibi01g0564	425	Pfam	Protein tyrosine and serine/threonine kinase	115	374	IPR001245	GO:0004672\|GO:0006468
	Mibi01g0564	425	PANTHER	OS01G0750732 PROTEIN	3	385	-	-
	Mibi01g0564	425	SMART	serkin_6	112	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g0564	425	FunFam	calcium/calmodulin-regulated receptor-like kinase 1	188	396	-	-
	Mibi01g0564	425	ProSiteProfiles	Protein kinase domain profile.	112	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g0564	425	SUPERFAMILY	Protein kinase-like (PK-like)	100	383	IPR011009	-
	Mibi01g0564	425	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	232	244	IPR008271	GO:0004672\|GO:0006468
	Mibi01g0564	425	MobiDBLite	consensus disorder prediction	387	419	-	-
	Mibi01g0564	425	Gene3D	Transferase(Phosphotransferase) domain 1	188	402	-	-
	Mibi01g0564	425	MobiDBLite	consensus disorder prediction	381	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g0564	Mibi-ChrMibi01	5266888	5268773	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g0564	98	374	Receptor kinase-like Gene Family	AT3G19300	44.876	4.75e-74	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Mibi01g0564		PK_Tyr_Ser-Thr	3.1e-52	CL0016