Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0547 ATGGCTACTCTTCATTTCTTTCATACGTTCTCTATACTCTTACATTCATATAAGAATTCCCAGCCTCTTTCTTCAGAAGTTTTCAGATTTCCTTGCAAGATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGTTCCGATACTATTGACAACGTCAAAACCAAGATTCAAGATAAGGAAGGCATCCCTCCTGACCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGAAGAACCCTAGCTGACTATAATATCCAGAAGGAATCAACCCTCCACCTGGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTCAAGACCCTAACGGGCAAGACCATTACCCTTGAGGTTGAGAGTTCTGATACGATTGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGGATTCCTCCTGATCAACAAAGACTCATCTTTGCTGGTAAACAACTTGAGGAGGGTCGTACCCTTGCAGATTATAACATTCAAAAGGAATCTACCCTGCACTTGGTTCTGCGACTCCGTGGTGGTATGCAAATTTTTGTGAAGACTCTGACGGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACTATAGATAATGTTAAGGCTAAGATACAGGACAAGGAGGGTATTCCTCCTGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAGCTGGAAGATGGACGTACCCTCGCTGATTATAACATTCAGAAGGAGTCAACTTTGCATTTGGTTTTGCGACTTCGTGGTGGGATGCAAATTTTTGTGAAGACTTTGACCGGGAAGACTATTACGTTGGAGGTTGAAAGTTCAGACACGATTGATAATGTTAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTAGAACTTTGGCTGATTACAATATTCAGAAGGAGTCTACTCTCCATCTTGTCCTCCGTCTTCGCGGTGGATTCTAA 1017 0.4435 MATLHFFHTFSILLHSYKNSQPLSSEVFRFPCKMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0547 338 FunFam Polyubiquitin 3 34 109 - -
Mibi01g0547 338 ProSitePatterns Ubiquitin domain signature. 212 237 IPR019954 -
Mibi01g0547 338 FunFam Polyubiquitin 3 262 337 - -
Mibi01g0547 338 Pfam Ubiquitin family 36 107 IPR000626 GO:0005515
Mibi01g0547 338 Pfam Ubiquitin family 112 183 IPR000626 GO:0005515
Mibi01g0547 338 Pfam Ubiquitin family 264 335 IPR000626 GO:0005515
Mibi01g0547 338 Pfam Ubiquitin family 188 259 IPR000626 GO:0005515
Mibi01g0547 338 PANTHER UBIQUITIN 34 113 - -
Mibi01g0547 338 ProSitePatterns Ubiquitin domain signature. 60 85 IPR019954 -
Mibi01g0547 338 CDD Ubl_ubiquitin 186 261 - -
Mibi01g0547 338 FunFam Polyubiquitin 3 186 261 - -
Mibi01g0547 338 CDD Ubl_ubiquitin 34 109 - -
Mibi01g0547 338 PRINTS Ubiquitin signature 196 216 IPR019956 -
Mibi01g0547 338 PRINTS Ubiquitin signature 238 259 IPR019956 -
Mibi01g0547 338 PRINTS Ubiquitin signature 217 237 IPR019956 -
Mibi01g0547 338 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Mibi01g0547 338 ProSiteProfiles Ubiquitin domain profile. 110 185 IPR000626 GO:0005515
Mibi01g0547 338 FunFam Polyubiquitin 3 110 185 - -
Mibi01g0547 338 ProSiteProfiles Ubiquitin domain profile. 186 261 IPR000626 GO:0005515
Mibi01g0547 338 ProSiteProfiles Ubiquitin domain profile. 262 337 IPR000626 GO:0005515
Mibi01g0547 338 SUPERFAMILY Ubiquitin-like 109 185 IPR029071 -
Mibi01g0547 338 ProSitePatterns Ubiquitin domain signature. 288 313 IPR019954 -
Mibi01g0547 338 Gene3D - 186 261 - -
Mibi01g0547 338 Gene3D - 262 338 - -
Mibi01g0547 338 Gene3D - 30 110 - -
Mibi01g0547 338 Gene3D - 111 185 - -
Mibi01g0547 338 SMART ubq_7 186 257 IPR000626 GO:0005515
Mibi01g0547 338 SMART ubq_7 110 181 IPR000626 GO:0005515
Mibi01g0547 338 SMART ubq_7 262 333 IPR000626 GO:0005515
Mibi01g0547 338 SMART ubq_7 34 105 IPR000626 GO:0005515
Mibi01g0547 338 ProSitePatterns Ubiquitin domain signature. 136 161 IPR019954 -
Mibi01g0547 338 SUPERFAMILY Ubiquitin-like 25 109 IPR029071 -
Mibi01g0547 338 SUPERFAMILY Ubiquitin-like 185 261 IPR029071 -
Mibi01g0547 338 CDD Ubl_ubiquitin 262 337 - -
Mibi01g0547 338 SUPERFAMILY Ubiquitin-like 261 337 IPR029071 -
Mibi01g0547 338 CDD Ubl_ubiquitin 110 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0547 Mibi-ChrMibi01 5125736 5127147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0547 262 338 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 6.33e-48 156