Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0517 ATGTCGCAATCTGGGAAGTCCGTACGAGAACTGGGCAATGACTCCCTCACGACTAGATTCCGTGATTCGCTCACCTGTGAAGAAGAGAACAAGCCCGATTTCAAAGAACTCGATCTGGGTTCCTTCATTTCTCCATTGAAAATCCGAAGCGCCGGTAATAATGCTGTACTCGCTGCCGCCGCCACTTCGAGCTCGAGCTCGAGTTCGAGTTCTTCAGGCTCAGTCACGGGAAGAAGCAACGCCCCAAAGTTGCCCAGAAGACCCGACGGAAAACCAAACCACCATTCCGGCGAACTCACCAGCTCTTTCGATACAAGCCCAAATGCCTCAGATACCCTCCGATCCGCTTCGGCGACCAGCAATTCCAAACCAGGTCATCGGAGATCGGTTTCTGCAGGAGCTCCATTAATTTACTCTGGTGGAAATCATAGCAGCCCTTCAGGGAGTAATAATATTTGCTCCAACAGTGCAACTTCAGGGATTAATTTATTTCCAACTGGTAATATTTGCCCTTCTGGGAAGATCTTAAAATCAGGCATCGTGTCTCGAGCTTCTTCAAATAGGACTGATGTGTTGGGTTCTGGGACGGCAAACTATGGCCGTGGTAATATAATGCGTGGTATTGTGAAATTGAGTAATTCTGGGAATGTTGTGGATGACAATGGGGCTGGGAATTCTCAGCTAGTTAGACGAGTGATGAGTGGTTCTGATCCAGAAGAGATGAAGAAGACTGGGAATGAGTTGTATAGAAGTGGTAATTTTGTGGAGGCATTGTCATTTTATGATAGGGCTATTTCGATATCGCCTAATAATGTGGCCTACCGGAGTAACCGGGCGGCGGCGTTGACGGCGTTGGGGAGGCTGGTCGAGGCGGCGAAGGAGTGTGAAGAGGCTGTGAGGTTGGAACCTAATTATGCCCGGGCACATCAAAGGCTGGCTTCTCTTTGCCTGCGTTTTGGACGTGTCGAACATGCCAAGCGCCACCTCTATCTCCCTGGACAACATGTGGATCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATACAAACCAATGTGCGGAGGCAAGAAAGATTGGCGATTGGAAAATTGCACTTGGGGAATCAAGTGCAGCCATTGCAGTTGGAGCAGATTTCTCGCCTGAGCTTGTTGCTTGTAAAGTGGAAGCTTATTTAAAACTCCATCAACTTGAGGATGCTGAGTTCAGTCTCTCAAACATTCCAAAGTTAGAAGGTAGTTCTTTATCCTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTGCACTTCGTTCATTCTCAGGTTCATATGGCCATGGGAAGATTTGAGAACGCGATAGCTGCAGCTGAAAAGGCTAGACTGCTAGATTACAGCAATGTAGAAGTTGAGAGGGTTCTAAATACTGTGAAAATGGTAGCAAGAGCTCGCTCAAAGGGCAATGATCTCTTTAGCACTGGAAAATTCTCTGAAGCTTGTTCTGCATATGGGGAAGGCCTCAATTATGACAGCTACAACTATGTTCTGTATTGTAATAGAGCTGTTTGTTGGTCTAAACTTGGACTATGGGAAAAGTCTGTTGAGGATTGTACCCAAGCTCTCAACATTCAACCAAATTACACCAAGGCCCTCTTTCGCAGGGCTGCATCAAACGCAAAGCTTGAAAGATGGTCTGAAGTCGTGAAAGATTATGAGACCTTAAAACAAGAACTCCCGGGAGACAATGAAGTCGTTGAATCCCTTCGTAAGGCTCAGCTAGCTTTAATTAAATCTCGTGGAGAGGACCACGCTGGAAAACTTGAAGTTGAAGTTGGAGCTGTTTCTTCGTTGGATGCATTCAAAGCTGCTATTGCTTCTGCTGGTATTTCAGTAGTTCACTTCAAAGAGGCTTCGGATGAAGTATGCGGAGAAATATCCCCATTCATAAATATGCTGTGCGTCAGATACCCATCTGTTAAATTTATCAAGGTTGATGTGGAGGAGTGTTTAGCCATAGCAAGAGCTGAGAGCATTAGAACTGTCCCAACGTTCAAAATTTATAAAAATGGAACGAAGGTGAAGGAGATGATTCGGCCAACGCATAAGATGTTAGAGGAGTCAGTGAGAAGCTATAGTTCCCTCTGA 2133 0.459 MSQSGKSVRELGNDSLTTRFRDSLTCEEENKPDFKELDLGSFISPLKIRSAGNNAVLAAAATSSSSSSSSSSGSVTGRSNAPKLPRRPDGKPNHHSGELTSSFDTSPNASDTLRSASATSNSKPGHRRSVSAGAPLIYSGGNHSSPSGSNNICSNSATSGINLFPTGNICPSGKILKSGIVSRASSNRTDVLGSGTANYGRGNIMRGIVKLSNSGNVVDDNGAGNSQLVRRVMSGSDPEEMKKTGNELYRSGNFVEALSFYDRAISISPNNVAYRSNRAAALTALGRLVEAAKECEEAVRLEPNYARAHQRLASLCLRFGRVEHAKRHLYLPGQHVDQSELQKLRLLEKHTNQCAEARKIGDWKIALGESSAAIAVGADFSPELVACKVEAYLKLHQLEDAEFSLSNIPKLEGSSLSCSQTKFFGMVGEAYVHFVHSQVHMAMGRFENAIAAAEKARLLDYSNVEVERVLNTVKMVARARSKGNDLFSTGKFSEACSAYGEGLNYDSYNYVLYCNRAVCWSKLGLWEKSVEDCTQALNIQPNYTKALFRRAASNAKLERWSEVVKDYETLKQELPGDNEVVESLRKAQLALIKSRGEDHAGKLEVEVGAVSSLDAFKAAIASAGISVVHFKEASDEVCGEISPFINMLCVRYPSVKFIKVDVEECLAIARAESIRTVPTFKIYKNGTKVKEMIRPTHKMLEESVRSYSSL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0517 710 FunFam TPR repeat-containing thioredoxin TTL4 602 708 - -
Mibi01g0517 710 CDD TRX_family 614 704 - -
Mibi01g0517 710 Gene3D Tetratricopeptide repeat domain 236 596 IPR011990 GO:0005515
Mibi01g0517 710 SUPERFAMILY Thioredoxin-like 536 706 IPR036249 -
Mibi01g0517 710 SMART tpr_5 510 543 IPR019734 GO:0005515
Mibi01g0517 710 SMART tpr_5 430 463 IPR019734 GO:0005515
Mibi01g0517 710 SMART tpr_5 238 271 IPR019734 GO:0005515
Mibi01g0517 710 SMART tpr_5 544 577 IPR019734 GO:0005515
Mibi01g0517 710 SMART tpr_5 272 305 IPR019734 GO:0005515
Mibi01g0517 710 SMART tpr_5 476 509 IPR019734 GO:0005515
Mibi01g0517 710 MobiDBLite consensus disorder prediction 1 20 - -
Mibi01g0517 710 MobiDBLite consensus disorder prediction 58 149 - -
Mibi01g0517 710 MobiDBLite consensus disorder prediction 58 79 - -
Mibi01g0517 710 SUPERFAMILY TPR-like 349 471 IPR011990 GO:0005515
Mibi01g0517 710 Pfam Tetratricopeptide repeat 248 312 - -
Mibi01g0517 710 Pfam Thioredoxin 614 697 IPR013766 -
Mibi01g0517 710 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Mibi01g0517 710 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 705 IPR044534 -
Mibi01g0517 710 MobiDBLite consensus disorder prediction 95 127 - -
Mibi01g0517 710 Gene3D Glutaredoxin 600 709 - -
Mibi01g0517 710 SUPERFAMILY TPR-like 239 329 IPR011990 GO:0005515
Mibi01g0517 710 MobiDBLite consensus disorder prediction 1 31 - -
Mibi01g0517 710 SUPERFAMILY TPR-like 475 588 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0517 Mibi-ChrMibi01 4857416 4860395 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g1084 07 15050159 15053690 Mibi01g0517 01 4857416 4860395 CCT
Mibi01g0517 01 4857416 4860395 Mibi01g0517 01 4857416 4860395 ECH