Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0483 ATGCTTCTGCAACAAAAGATGGATGATGCAGAAACTTCAAGTGGTTTTCCTCCTCATCACAACCCAACTGATCATCTTATTGAAAGTAACAACAATCCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCGGGAAATCCAGATCCTGAGGCAGAGGTCATAGCCTTGTCACCAAAAACCCTGATGGCCACCAACAGATTCCTGTGTGAAATCTGTGGGAAAGGTTTCCAAAGGGATCAAAATCTGCAGCTGCATAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAGAGGACAAGTAAAGAACCAAGGAAGAGAGTGTATGTGTGCCCAGAGAAGACATGTGTGCACCATGACCCTTCGAGGGCACTGGGGGACTTGACAGGGATAAAGAAGCACTTTTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGAGATATGCTGTCCAGTCTGACTGGAAAGCCCACACTAAAACCTGTGGCACCAGAGAATACAAATGTGATTGTGGCACTATCTTTTCACGGAGGGACAGTTTCATAACTCACAGGGCATTCTGCGATGCCTTAGCAGAAGAGACAGCAAGAGTGAATGCCTCCAACTCCTTTCTTGGATACAGCATGATGGGAAATTCCCAAGGAGGGCCTGGCATGAGCATGATGACCACCACTCATTTCCCTTCCATTTTGAAGCCAATTTCAAACACTGCTGAAACAAATCATCAAGCACCTAGGGGACTATCTCTTTGGATGACTCCATCTCAAACCCATCAGGACACAATGGTCAATAATAACAACAATAACATGTTTGATATTCATCATCAACTTGGGTCACTCACTGGCCCATCATCATCAGGATCAATACTATACGGGAATAACCACCCTCTTGTCTCATGCTCAAATCCCCAGCTCATGAATTGGGTGTTTGGGGCTAATAATAACAACAATAATAACAAGAACGCCACTCATCATCATAATCATCATCAAGATCAGCTGATCAGTGTTCCATCATTGTACAGCTCCCAACATCAGCAGTCGCATCACACATCCTCTGCAAACATGTCGGCTACTGCTTTGCTGCAGAAAGCTGCACAAATAGGGGCAACTTCAACCGACACGTCATTCTTAGGAACCTTAGGGTTGAAATGCAGCAACAGTAGTAGTCAGGAACAACAAGGGAACAAATTTTGTAGCATCTATGATGCAGGTTCATCTGTACTGGAGACAGAGAATCCAGCAAAACGCAGGAATATACAGCAGAGAGATGAGATGATTAATAATGGAGGAGAGCAGACTAGGGATTTTCTGGGTGTCGGTGTAGAATCCATTTGCCATGCTGCTCCTATCAACGGCTGGATTTAA 1371 0.4493 MLLQQKMDDAETSSGFPPHHNPTDHLIESNNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHTKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASNSFLGYSMMGNSQGGPGMSMMTTTHFPSILKPISNTAETNHQAPRGLSLWMTPSQTHQDTMVNNNNNNMFDIHHQLGSLTGPSSSGSILYGNNHPLVSCSNPQLMNWVFGANNNNNNNKNATHHHNHHQDQLISVPSLYSSQHQQSHHTSSANMSATALLQKAAQIGATSTDTSFLGTLGLKCSNSSSQEQQGNKFCSIYDAGSSVLETENPAKRRNIQQRDEMINNGGEQTRDFLGVGVESICHAAPINGWI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0483 456 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Mibi01g0483 456 MobiDBLite consensus disorder prediction 7 36 - -
Mibi01g0483 456 MobiDBLite consensus disorder prediction 1 49 - -
Mibi01g0483 456 Gene3D Classic Zinc Finger 62 89 - -
Mibi01g0483 456 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Mibi01g0483 456 Gene3D Classic Zinc Finger 100 190 - -
Mibi01g0483 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Mibi01g0483 456 FunFam protein indeterminate-domain 12-like 45 113 - -
Mibi01g0483 456 SMART c2h2final6 142 162 IPR013087 -
Mibi01g0483 456 SMART c2h2final6 107 137 IPR013087 -
Mibi01g0483 456 SMART c2h2final6 66 88 IPR013087 -
Mibi01g0483 456 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Mibi01g0483 456 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 441 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0483 Mibi-ChrMibi01 4605593 4607832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0483 32 456 IDZ Gene Family AT1G03840 49.797 3.70e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g0483 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0483 01 4605593 4607832 Mibi01g0483 01 4605593 4607832 ECH