Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0473 ATGTTCTCCGATGAGGCTTTCCTCCACAAATTCCTCCCCCGTAACAACCTCGACTCCTCCGATGATGACGACGAAGACTCCTCCGATCCCTACTCCTCCGACCACTTCCGCATGTACGAGTTCAAGGTCCGCCGCTGCACCCGCAGCCGCAGCCACGACTGGACCGACTGCCCCTTCGCCCACCCCGGCGAGAAGGCCCGCCGCCGTGACCCCCGCCGCTTCCACTACTCCGCCACCGTCTGCCCCGACTACCGCCGCGCCTCCTGCTCCCGCGGCGACTCCTGCCACTTCGCTCACGGCGTCTTCGAGTGCTGGCTCCACCCTGCTAGGTACAGAACTGAGGCCTGTAAAGATGCCAACAACTGTAACCGTAAGGTTTGTTTCTTCGCTCACACCCCTCGCCAGTTGAGAATTCTCCCTCCTCCTTCTCCTTCTCCTTCATCCGCCGATCACAACAAGTTCTTCAATCCAACCTCTGCATCCAACAATTGCTGCCTCTTTTGCCATCATTGCACTTCATCCCCAACCTCCACTTTGTTTGGCATGTCCCATATGTCGCCCCCGCTCTCTCCGTCCTCCTCCCCTGTTTCGCCCCCCCTGTCTCCCGTGAAACGCCGGCCCACGGCCAACGGCATGTCGCCCATCTCCCGATATTGCGACAGGCTCGCCGGATGCGAGGCGCCTAGTAGGTTGGTGAATAATAATAACAACAATAGTATTAATAATAACGGGTTGGCTGGTTATAAAGATGCTCTCACTGAATTAATGAGCTCTTTGGAGGGTTTGAATTTTAATATTGAAGCTAATGCTTCCCCTTCCCCTGTTTCTGCTACAAAATCCCCAAACCTGCCGTGGCTTGATATGTCTTTGATTAACTGTGATGACCATTATCAGCATCAGCAGCAACAGTTCATTCTTTCACCTGCCGCTTCTTTTGGCTGTGAAGATCAGCAGCGGCATCAACAACAACAACAACAGTTCATTCTTTCCCCATCCCCTCATAATACCCCAACCACATCTTCTGTTCCTTCAAACTTCTCTCATGGCAAATTAACGTTCCTCAGCAGTGAAAGCAAAGTTGTTTCAAATGATAACGGTCCATCCTGCTCAGCCCCAGATCTCGGATGGGTCAACGAGTTGCTGATGTAG 1149 0.5335 MFSDEAFLHKFLPRNNLDSSDDDDEDSSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSATVCPDYRRASCSRGDSCHFAHGVFECWLHPARYRTEACKDANNCNRKVCFFAHTPRQLRILPPPSPSPSSADHNKFFNPTSASNNCCLFCHHCTSSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKRRPTANGMSPISRYCDRLAGCEAPSRLVNNNNNNSINNNGLAGYKDALTELMSSLEGLNFNIEANASPSPVSATKSPNLPWLDMSLINCDDHYQHQQQQFILSPAASFGCEDQQRHQQQQQQFILSPSPHNTPTTSSVPSNFSHGKLTFLSSESKVVSNDNGPSCSAPDLGWVNELLM 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0473 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 100 IPR000571 GO:0046872
Mibi01g0473 382 MobiDBLite consensus disorder prediction 184 207 - -
Mibi01g0473 382 ProSiteProfiles Zinc finger C3H1-type profile. 76 102 IPR000571 GO:0046872
Mibi01g0473 382 SUPERFAMILY CCCH zinc finger 74 104 IPR036855 GO:0046872
Mibi01g0473 382 MobiDBLite consensus disorder prediction 315 344 - -
Mibi01g0473 382 SMART c3hfinal6 110 133 IPR000571 GO:0046872
Mibi01g0473 382 SMART c3hfinal6 75 101 IPR000571 GO:0046872
Mibi01g0473 382 Gene3D - 74 139 - -
Mibi01g0473 382 PANTHER UNKEMPT FAMILY MEMBER 13 381 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0473 Mibi-ChrMibi01 4491537 4492685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0473 31 198 C2H2 Transcription Factor Family AT5G12850 51.149 2.45e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi01g0473 zf-CCCH 3.3e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0473 01 4491537 4492685 Mibi01g0473 01 4491537 4492685 ECH