Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0465 ATGAACGCGAAATCGCGGAAAATTGTTGAATCAGCGAACCCGCGTTCAGAGGAGCAAGGGCGTTCCCAGAAAGGCCCTCCTCTTCTATTCTCCCATGTCATGTCACTGCACGCTTTCAAGGAAACTCTCAAGCCTTGCTCTACCCAACCCTCTTCTTCATCGCTTTGCCAGTCGCAGTCTTCAATTTTCCGAGATTCCAACCTCCTAATCCCTAGGAAGCCCCCAAAGTCCTCCCTCGCCCAGCAACTTCGTCGCCTGCACGACCCTCTTGCTCCTCCCTTAATTCAGCCGCACAATTCACCTAAGCGAGATAGTGAACAGAAAAGTGTTGACGTCGTCGATGAGGAAGAGGAGCCAGAATTGAAGAGGGCAAAATTCGGTGGATCTAAATTGTGTCAGTTTCAGTTCGATCATACTGGACCCTTTGAACCTCTGGTCTTGTCTTCCGATGGAGAAGTTCCTGTGGTACAGGTTCCTGCATCTATCAACTGCAGACTTCTTGAACATCAAAGAGCAGGAGTGAAGTTTCTGTATAACTTGCATAAAAACAATCATGGTGGCATTCTTGGCGATGACATGGGCCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATGGAGAATATTTGTCAAAGGAAAACCAAACTATGAAAAGAGATCCCGTATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAGCTTTAGTGTTTCCATTTATCATGGTTCAAACCGAGATCTAATTCATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGAATTCACGGTAGCATCTTGTCAGAAATCAAATGGGACATCGTGGTTATTGATGAGGCTCATCGGCTCAAGAATGATAAATCAAAACTCTACAAGGCATGTTTAGAAATAAAAACTCAAAGACGTTTTGGTCTTACTGGCACAGTCATGCAAAATAAGATTATGGAACTGTTTAATCTCTTTGATTGGGCTGTTCCAGGATCCCTGGGAACACGGGAACACTTTCGAGGTTTCTATGATGAACCCCTGAAGCACGGTCAGAGGTCAAATGCTCCAAAGAGGTTTGTTGAAATTGCTAACAAGCGAAAACAGCACCTTGTGACAGTTCTTCAGAAATATATGTTGAGAAGGACGAAGGAAGAGACCATTGGACATCTGATGATGGGAAAGGAAGATAATGTCGTGTTCTGTGCCATGAGTGAATTACAAAAGCGGGCATATAGGAGAATGCTACAACTTCCTGATATTCAATGCCTTATTAATAAGGATTTTCCTTGTAGTTGTGGAAGCCCACTCACACAAGTTGAATGTTGCAAGAGGATTGTATCAGATGGGATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATCAAGCCAAATCCCAAAGATGACCCAGACAAACAGAGAAAAGACGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGGTTGGTGGGAACGTGCAGAATGAGAATTTTATGGGTCTTAGTGATGTGAAACATTGTGGAAAAATGAGAGCACTTGAAAAACTTTTGTTTTCATGGATCTCTCAGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTTGACATACTGGAGAAATTTCTAATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGTTCTACTCCAACTAATTTACGTCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTTTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTAGTATTTGATCCCAACTGGAATCCGGCTCAAGACTTACAGGCACAGGACAGGTCATTCCGATTTGGGCAGAAACGACATGTTGTAGTATTTCGGCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATATACAAGCAGCAACTATCAAACATCGCTGTCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTCGGAATTAGCAATTTATTTCGAGATCTGTCTGACAAGCTTTTTACAAGTGAAATAATTCATGTGCATGATAGGGAAGGAGGAGAACATGGGCGTAGAATAGGACTGGGAGAAAAACGTGTTCCTTCAGAAGATGATATATTAGTATTAGAGTCTGGGAACGTGCAATCAACCAATGTTAAGAGGAATACAACAAGTGAAGCAGATCTAGATGATCTTGGCGTTGTCTATGCTCATCGGAATGAAGATGTAGTCAACTTTGGTCACGGAGAGAAGACAAAGACCGGCATCAATCAAAGTGAAAGCCAAGCCATGCCTGTTGTCCAGAGAGAAGAACCAAACCGCGTGGTTAAAAAACAGAAAGTTCCTATCATTAATGAGAGGAAGAGAGCCCAATATAGGCTGCTCGCTCGGTCTAGAGGTATGGGAGAGCTTGAATTTAGCATGTGGTTATTGTCAGCGACTCCAATTGAAAGAGAGGAGGTGCTTCGAGACTACAGGAGGAGGAAGATGCGTTAA 2691 0.4285 MNAKSRKIVESANPRSEEQGRSQKGPPLLFSHVMSLHAFKETLKPCSTQPSSSSLCQSQSSIFRDSNLLIPRKPPKSSLAQQLRRLHDPLAPPLIQPHNSPKRDSEQKSVDVVDEEEEPELKRAKFGGSKLCQFQFDHTGPFEPLVLSSDGEVPVVQVPASINCRLLEHQRAGVKFLYNLHKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYLSKENQTMKRDPVLIICPTSVIHNWESEFSKWASFSVSIYHGSNRDLIHDKLEAHGVEILITSFDTYRIHGSILSEIKWDIVVIDEAHRLKNDKSKLYKACLEIKTQRRFGLTGTVMQNKIMELFNLFDWAVPGSLGTREHFRGFYDEPLKHGQRSNAPKRFVEIANKRKQHLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDFPCSCGSPLTQVECCKRIVSDGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQRKDAEFAAAVFGPDIDLVGGNVQNENFMGLSDVKHCGKMRALEKLLFSWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIHVHDREGGEHGRRIGLGEKRVPSEDDILVLESGNVQSTNVKRNTTSEADLDDLGVVYAHRNEDVVNFGHGEKTKTGINQSESQAMPVVQREEPNRVVKKQKVPIINERKRAQYRLLARSRGMGELEFSMWLLSATPIEREEVLRDYRRRKMR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0465 896 SMART helicmild6 584 667 IPR001650 -
Mibi01g0465 896 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 147 398 - -
Mibi01g0465 896 SMART ultradead3 162 357 IPR014001 -
Mibi01g0465 896 CDD SF2_C_SNF 549 678 - -
Mibi01g0465 896 MobiDBLite consensus disorder prediction 90 119 - -
Mibi01g0465 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 722 IPR027417 -
Mibi01g0465 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 399 IPR027417 -
Mibi01g0465 896 MobiDBLite consensus disorder prediction 1 20 - -
Mibi01g0465 896 Pfam SNF2-related domain 181 438 IPR000330 GO:0005524|GO:0140658
Mibi01g0465 896 Gene3D - 145 398 IPR038718 -
Mibi01g0465 896 MobiDBLite consensus disorder prediction 1 29 - -
Mibi01g0465 896 Pfam Helicase conserved C-terminal domain 555 667 IPR001650 -
Mibi01g0465 896 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 349 IPR014001 -
Mibi01g0465 896 Gene3D - 411 742 IPR027417 -
Mibi01g0465 896 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 711 IPR001650 -
Mibi01g0465 896 PANTHER SNF2/RAD54 FAMILY MEMBER 43 844 - -
Mibi01g0465 896 MobiDBLite consensus disorder prediction 101 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0465 Mibi-ChrMibi01 4437342 4443757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0465 186 708 RAD5 or RAD16-like Gene Family AT5G05130 25.440 3.22e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi01g0465 SNF2_N 2.8e-56 CL0023