Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0378 ATGGACATCGACCCTTCTCACACCTCCAATTGGCTTTGTGATTATGCCTTTGATGTTTCTGTCGCCGGAGCTGAATTCCCGGTCGTCCCTTCCGGTGGTTTCAACTGGGTTTCTCCTACTTTCCATGGTTCTTCTGATACGAGTTTGGACCTGGAGTACTCACTGGACAATTCAGCTTTCATGGAAAATGGCCCTTCAAAGCGATTGAAGTCTGAATCATGTGCATCTGGCTCCAAGGCATGCCGTGAGAAACTGCGGAGGGATAGACTGAATGAGAGGTTTTTGGAATTGAGTTCTATTTTGGACCCTGGTAAGCATCCAAAGACGGATAAGGCTGCTATATTAAGTGATGCAGTTCGAATGTTAACAGAACTACGAGGTGAAGCCCAGAAGCTGAAGGAAACAAATGATGAATTGCTTGAAAAGATTAAGGAACTGAAGGAAGAGAAGAACGAGCTTCGTGATGAGAAGAATAGGCTGAAGATAGATAAAGAAAAGCTGGAGCAACAAGTCAAAGGGATGAATGCACAACCGACCTATCTTTCTCACCCTTCTGCTGCATTTACTGCTCAAGGCCAAACTGCCAGCCACAAGCTCATACCTTTTGTTGGCTATCCTGGAATTGGCATGTGGCAGTTTTTGCCACCTACAACTGTTGATACATCTCAGGACCATCTGCTTCGCCCTCCTGTTGCCTAA 699 0.4578 MDIDPSHTSNWLCDYAFDVSVAGAEFPVVPSGGFNWVSPTFHGSSDTSLDLEYSLDNSAFMENGPSKRLKSESCASGSKACREKLRRDRLNERFLELSSILDPGKHPKTDKAAILSDAVRMLTELRGEAQKLKETNDELLEKIKELKEEKNELRDEKNRLKIDKEKLEQQVKGMNAQPTYLSHPSAAFTAQGQTASHKLIPFVGYPGIGMWQFLPPTTVDTSQDHLLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0378 232 Coils Coil 115 177 - -
Mibi01g0378 232 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Mibi01g0378 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 147 IPR036638 GO:0046983
Mibi01g0378 232 Gene3D - 78 149 IPR036638 GO:0046983
Mibi01g0378 232 FunFam Transcription factor bHLH34 66 123 - -
Mibi01g0378 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Mibi01g0378 232 SMART finulus 80 131 IPR011598 GO:0046983
Mibi01g0378 232 CDD bHLH_AtILR3_like 79 137 - -
Mibi01g0378 232 PANTHER BHLH TRANSCRIPTION FACTOR 7 232 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0378 Mibi-ChrMibi01 3656667 3659642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0378 7 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.556 9.91e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi01g0378 HLH 5.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0378 01 3656667 3659642 Mibi01g0378 01 3656667 3659642 ECH