Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0340 ATGAACTGGAGCAGAGGCAGCATCCTAGGCCATGGCTCATCAGCCACCGTCTCTCTCGCTGCCTCTGGCCAATCCTTCTTAGCCGTCAAGTCATCGGAGCTTTCTTCCTCAGGATTGTTACAGAGAGAGCAGAGAATTCTCTCTTCTCTGTCCTCTCCCTATATAGTTACCTATAAAGGGTGTGACATCACAAAGGAAAACAACAAGGTATTCTACAATCTTTTCATGGAGTATATGCCTCTTGGCACGCTTCTTCAGGCAACTCGCCGGCAAGGTGGTCACCTTGACGAGTCAATGATCGCATATTACATTCGGCAAGTTTTGCAGGGGCTACAGTATCTACATTCAAATGGGTTGGTACATTGTGACATTAAGGGTACCAATATCTTGATTGGAGAAGATGGAGCCAAAATTGCTGACTTTGGATGTGCTAAGCCGGCGGCGGCGGCGCCGGTAAGTGGGACCCCGATGTTTATGTCGCCGGAGGTGGCTCGTGGGGAAGAACAGGGGTATCCTTGTGATATATGGGCTCTTGGGTGCACTGTGATTGAAGTTGCTTCAGGGATTTCACCATGGCCTAATGTAGGTGACCCTGTTTCGGTTCTTTACAAGATAGCATATTCCGATGAGGTGCCGGAGATTCCGGGGTTATTATCGGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCGAAAGAGAGATGGACGGCAAGTCAACTTCTGGAGCATCCATTTCTTGGAGAATTGAATTCCAATTTTAATAAGCAAATGCACGAATCTAATTCAAGTTCTCCAACAAGTATTCTGGAGCAAGCCTTTTGGAGTTGTGTGGAAGAATCAGAGAGTGTAGACAATCTTGTACATAGTCACACAAGTTTCGAAAATTCTCCAGCTGTTAGAATCCGACGATTAGCTGTGAGTTCAGGGGAGCCCAATTGGGTTGAAGATGGGAATTGGATCACAACTGTAGGGAATGAAGGAGGAGTTGAAGCATCAACTAGCAACAATTGGGAAGAGTCAGAGAAAAGCAACGTTATTAGTGGTAGAATTAGTCATTGTTTTTGGGATGATTACGAATTTAGGGATGTTAGTATTGCATCAAGTAGTATTACTTTCGAGAGAGGCATTGATAAACAGCCACTCCGTCCAGTATCGATTTTTTTATAA 1176 0.4515 MNWSRGSILGHGSSATVSLAASGQSFLAVKSSELSSSGLLQREQRILSSLSSPYIVTYKGCDITKENNKVFYNLFMEYMPLGTLLQATRRQGGHLDESMIAYYIRQVLQGLQYLHSNGLVHCDIKGTNILIGEDGAKIADFGCAKPAAAAPVSGTPMFMSPEVARGEEQGYPCDIWALGCTVIEVASGISPWPNVGDPVSVLYKIAYSDEVPEIPGLLSEEAKDFLGKCLRRNPKERWTASQLLEHPFLGELNSNFNKQMHESNSSSPTSILEQAFWSCVEESESVDNLVHSHTSFENSPAVRIRRLAVSSGEPNWVEDGNWITTVGNEGGVEASTSNNWEESEKSNVISGRISHCFWDDYEFRDVSIASSSITFERGIDKQPLRPVSIFL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0340 391 Pfam Protein kinase domain 5 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g0340 391 SUPERFAMILY Protein kinase-like (PK-like) 3 290 IPR011009 -
Mibi01g0340 391 FunFam Mitogen-activated protein kinase kinase kinase 17 2 303 - -
Mibi01g0340 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Mibi01g0340 391 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Mibi01g0340 391 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g0340 391 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi01g0340 391 CDD STKc_MAPKKK 2 249 - -
Mibi01g0340 391 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Mibi01g0340 391 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0340 Mibi-ChrMibi01 3339980 3341155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0340 2 342 MAP Kinase Kinase Kinase AT5G55090 50.000 8.87e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mibi01g0340 Pkinase 3.3e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0340 01 3339980 3341155 Mibi07g0542 07 6560758 6561930 CCT
Mibi01g0340 01 3339980 3341155 Mibi01g0340 01 3339980 3341155 ECH