Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0323 ATGGATGAAATCGAAGTTCCTTCTCATTTCCTCTGCCCCATTTCCCTTCAGCTCATGAGGGACCCCGTCACGGTACGCACCGGAATAACATACGACAGAGAAAACATCGAAACATGGCTGTTTTCATGCAAGAACAGAACATGCCCTGCCACGAATCAATCCATTTTACACACAGATCTCACACCAAACCACACTCTTCGTCGTCTCATCCAGGCCTGGTGCACCCTCAATGCCTCCTTGGGCATCGAGCGTATTCCCACTCCGAAGCCACCCATCGACCAAATCCACATCTCCAAACTCCTCTCCCAAGCAAACCACTCCCCACACAACCACCTCAAATGCCTCTCAACCCTCCGATCCATCGCTTTCCAAAGCCACAGAAACAAGATCTACTTAGAATCCGCAGGCGCAGTAGAGTTCCTAGCCTCAGCCTTGAAGCTCACCAGCAGAGACGACTCCCAAATCAGCGACAGCGAAGCAGCGCTTGAGGTCCTGTTCCATCTAAATCCTTCTGAATCTCACATCAAGAATCTAATCAACGACGAGGACATCCAATTCACCCACTCCCTAATCCAGATCCTGAGGCTCGGGAACTACCAATCCAGAGCGTACGCGACAATAATGCTAAAATCGGCGTTGGGGGTGTCAGATCCGAGCGAATTGATAAACGTGAGGACGGAGTTATTCGGGGAAATAACTAGAGTGTTGAGGGACAAGATTTCACAGCAAGCGACGAAGGCGGCGTTGAAGATGGTGGTGGAGCTGTGTCCATGGGGGAAGAACAGGATAAAAGCGGTGGAAGGAGGGGTAACAATGGTGATGATAGAGAAGCTTCTAGAAGCATCGGAGAGGAGGGAGTGTGAATTGATTATGATAGGGTTGGAACAAATGTGTGGGTGTGCGGAGGGAAGGGCGGAGGTGGTGAAGCATGGGGCAGGGGTGGCCATTGTGGCCAAGAAGATACTGAGGGTTTCACACGTGGCGACCGATAGAGGGGTCAAGATATTGAGCTGGATTTGTAAATATGCGGGCAATGGGAGGGTAATTCAGGAAATGTTGCATGTGGGTGCTGTGTGTAAGCTGTGTTTGGTGTTGCAGGTGGAGGGCAGCTTGAAGACGAAGGAGAGGGCAAAGGAGATTCTCAGATTGCATTCTCATGTTTGGAGTATTTCCCCGTGTCTTCCTCCTTCCCTCCTTCGATCCTATCCTTCTTCATCTAATTGA 1224 0.5041 MDEIEVPSHFLCPISLQLMRDPVTVRTGITYDRENIETWLFSCKNRTCPATNQSILHTDLTPNHTLRRLIQAWCTLNASLGIERIPTPKPPIDQIHISKLLSQANHSPHNHLKCLSTLRSIAFQSHRNKIYLESAGAVEFLASALKLTSRDDSQISDSEAALEVLFHLNPSESHIKNLINDEDIQFTHSLIQILRLGNYQSRAYATIMLKSALGVSDPSELINVRTELFGEITRVLRDKISQQATKAALKMVVELCPWGKNRIKAVEGGVTMVMIEKLLEASERRECELIMIGLEQMCGCAEGRAEVVKHGAGVAIVAKKILRVSHVATDRGVKILSWICKYAGNGRVIQEMLHVGAVCKLCLVLQVEGSLKTKERAKEILRLHSHVWSISPCLPPSLLRSYPSSSN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0323 407 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Mibi01g0323 407 CDD RING-Ubox_PUB 10 53 IPR045210 -
Mibi01g0323 407 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Mibi01g0323 407 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Mibi01g0323 407 SUPERFAMILY RING/U-box 3 77 - -
Mibi01g0323 407 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Mibi01g0323 407 Gene3D - 96 387 IPR011989 -
Mibi01g0323 407 SUPERFAMILY ARM repeat 105 381 IPR016024 -
Mibi01g0323 407 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Mibi01g0323 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0323 Mibi-ChrMibi01 3165231 3166454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0323 2 403 U-box Gene Family AT2G35930 51.232 2.26e-144 415