Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0291 ATGAAACTCTTACCCAGTTTCCAATGCTTGAATAACGGTATTATATATAACCTTTATCTGAACGACCGGAGTGTTAGGAGGGTGCTCCGATTGTTCTATAAGATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGATAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATTTTGATGAAGAAAATGATCCCGAGGAAACAATGGATGAAGAAATTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAGATAGAAGAAGAGGTGGAAGAAGAGGAGGAGGAGGAGGAGGAGGTTGAAGAAGAAGAGGAGGAAGAGGAGGATGATGCTGATCATGCCAATGACACCGATGCCTTGCAAAACATTAGCAGTGATGAGGCAAAGGTGGAAGATGAGGATGATAAGAAAAGGCATGCAGAACTTCTCTCTCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGGCTTTTTGCGAGTCTATTGGTGAAGTTGTAGAGGTGAGGGTTATGAAAGGAAAAGATTCTGCTGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAATGTGGAATTGGCATCTAAAGCCATTGAAGAGCTGAATAATAAACAATTTAAGGGTAAAAGGATAAAATGTTCATCATCTCAAGCAAAACACCGACTTTTCATTGGCAATGTTCCTAGAAGCTGGGGAGATGAGGATTTAAGGAAGGTTGTAACTGAGATTGGGCCGGGAGTTACAACTGTGGAACTAGTCAAGGACATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATCCAAATTTCAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTACATCTCAGGTGAGGGCAGTATATGTCAAAAACTTGCCTAAGGATGTAACTGGAGATGAACTAAAGAAACTTTTTGAACACCATGGGAAGATTTCAAAGGTGGTTCTGCCTCCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGGTTGACAAGTCTGGAGGACCAAATACACCGAAGGCAGGATTGCTTTCTGGTTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGGCCTAGGCTCTGGATATGGTGCTGCAGGTCTTGCACAGGTGGCACATCCAATGATACATGGAAGGGGTCCTGCTCCAAGTGGAATGGCCATGATGCCCATGCTTTTGCCTGATGGACGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCACCTATTTCACAACATAGAGGCGGCAGGCATGGAGGAGGGAGTGGCAGCAGGAACTTTGGCAGTTCAAGCAAGGGAAGGCACAACAACAATGCTAGTGGCCAAGGGCGCAGATACCGTCCATATTAG 1611 0.4389 MKLLPSFQCLNNGIIYNLYLNDRSVRRVLRLFYKMPRGKANSSSVDKPSEPEKPTESDEKVDFDEENDPEETMDEEIEYEEVEEEEEVEEIEEEVEEEEEEEEEVEEEEEEEEDDADHANDTDALQNISSDEAKVEDEDDKKRHAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVVEVRVMKGKDSAENKGFGFVTFKNVELASKAIEELNNKQFKGKRIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVTEIGPGVTTVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDPNFKLGDNAPTVSWADPKNADSSATSQVRAVYVKNLPKDVTGDELKKLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGPNTPKAGLLSGYPPHVGYNLIGGAYGGLGSGYGAAGLAQVAHPMIHGRGPAPSGMAMMPMLLPDGRIGYVLQQPGMQPQTPPISQHRGGRHGGGSGSRNFGSSSKGRHNNNASGQGRRYRPY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0291 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 407 IPR000504 GO:0003723
Mibi01g0291 536 FunFam RNA recognition motif-containing protein 55 235 - -
Mibi01g0291 536 Gene3D - 236 316 IPR012677 -
Mibi01g0291 536 MobiDBLite consensus disorder prediction 38 141 - -
Mibi01g0291 536 MobiDBLite consensus disorder prediction 61 119 - -
Mibi01g0291 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 400 IPR000504 GO:0003723
Mibi01g0291 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 298 IPR000504 GO:0003723
Mibi01g0291 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 227 IPR000504 GO:0003723
Mibi01g0291 536 SUPERFAMILY RNA-binding domain, RBD 152 321 IPR035979 GO:0003676
Mibi01g0291 536 CDD RRM_SF 157 229 - -
Mibi01g0291 536 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 40 520 - -
Mibi01g0291 536 SMART rrm1_1 236 313 IPR000504 GO:0003723
Mibi01g0291 536 SMART rrm1_1 330 403 IPR000504 GO:0003723
Mibi01g0291 536 SMART rrm1_1 156 229 IPR000504 GO:0003723
Mibi01g0291 536 MobiDBLite consensus disorder prediction 485 536 - -
Mibi01g0291 536 Coils Coil 74 122 - -
Mibi01g0291 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Mibi01g0291 536 Gene3D - 318 427 IPR012677 -
Mibi01g0291 536 SUPERFAMILY RNA-binding domain, RBD 324 429 IPR035979 GO:0003676
Mibi01g0291 536 SMART rrm2_1 330 403 IPR003954 GO:0003676
Mibi01g0291 536 SMART rrm2_1 156 229 IPR003954 GO:0003676
Mibi01g0291 536 Gene3D - 36 235 IPR012677 -
Mibi01g0291 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 317 IPR000504 GO:0003723
Mibi01g0291 536 MobiDBLite consensus disorder prediction 510 530 - -
Mibi01g0291 536 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 236 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0291 Mibi-ChrMibi01 2855900 2859597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0291 155 411 Eukaryotic Initiation Factors Gene Family AT1G71770 28.464 3.90e-18 85.9