Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0279 ATGGATTTGGGGGAACATTTCAGTGTAGAAGACAAGTGTATGGACTTTCACACTCCAACTTTCTTTGAATGGCTCAAACCATGTTCATATCCTCCTCCTCCTCCTCCTTCATCTTCTATGTCACATCATCATCAAGAGACTATCCAGTTTTTGCCAATTTTAACAGAAAATCCCTCAAAAGAGGAAGATTTTGCACGTAGTACTATTGGAGTAATCAAAGAAGAGAAGGACGACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGGTTACCTAACACACAAGGTTTTGAGGCTGATGATGATGACAAGAAGAATAAGAAAGTTTCTGATGCGACGAAGGAGGAAGAAGGAGTAGTGCATAACAGAAGCTTTCAAGGGTTCTTCAAGAATAACGCAGAGAGAAGGTTCTGGATACCAACTCCGGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACTTGCAGATGCACATGTGGGGTCATGGATCAGAGTATAGAAAAGGAGCAGAATCACTGAGAGGAACACAACCAGCAGCAATGTTGAGGCTGCCATGTTATTGTTGTGCACAAGGCTGCAAGAACAATATCAACCATCCAAGAGGGAAGCCTCTTAAGGACTTCAGAACCCTCCAAACCCACTTCAAGAGGAAACATGGTTCTAAGCCTTTTGTCTGCAGAAAATGTGCCAAAATGTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTCTGGTATTGCTCTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCATATCCTTTGGGAAAGGTCACTCCCCTCGTCTTGATGAACATGATGATGATGACAAGCAATGTTACTTCATCACTACTAGTACCACTGCCTCTCAAGATTCCTAA 948 0.4304 MDLGEHFSVEDKCMDFHTPTFFEWLKPCSYPPPPPPSSSMSHHHQETIQFLPILTENPSKEEDFARSTIGVIKEEKDDDVDEQVTVALHIGLPNTQGFEADDDDKKNKKVSDATKEEEGVVHNRSFQGFFKNNAERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLRGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKMFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIISFGKGHSPRLDEHDDDDKQCYFITTSTTASQDS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0279 315 SUPERFAMILY beta-beta-alpha zinc fingers 144 176 IPR036236 -
Mibi01g0279 315 FunFam Zinc finger protein WIP2 206 288 - -
Mibi01g0279 315 Pfam Zinc finger, C2H2 type 153 172 IPR013087 -
Mibi01g0279 315 Gene3D Classic Zinc Finger 152 175 - -
Mibi01g0279 315 Gene3D Classic Zinc Finger 194 285 - -
Mibi01g0279 315 MobiDBLite consensus disorder prediction 98 116 - -
Mibi01g0279 315 MobiDBLite consensus disorder prediction 95 116 - -
Mibi01g0279 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Mibi01g0279 315 SMART c2h2final6 200 232 IPR013087 -
Mibi01g0279 315 SMART c2h2final6 153 175 IPR013087 -
Mibi01g0279 315 SMART c2h2final6 237 257 IPR013087 -
Mibi01g0279 315 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Mibi01g0279 315 PANTHER ZINC FINGER PROTEIN WIP2 37 300 IPR043584 GO:0003700|GO:0010468
Mibi01g0279 315 SUPERFAMILY beta-beta-alpha zinc fingers 223 257 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0279 Mibi-ChrMibi01 2723374 2725472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0279 8 290 C2H2 Transcription Factor Family AT1G08290 54.407 1.52e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g0279 zf-C2H2 0.00051 CL0361