LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi01g0237	ATGGCGGAGGAGCGCAACGGCGATAAGAATGATAACAGCGATTACAGTTCCGAGGATGAGGGAACTGAGGATTACAGGCGAGGAGGTTACCATGCGGTACGGATTGGCGATACTTTCAATAATGGCTGCTATGTTGTGCAGGCCAAGCTTGGTTGGGGTCATTTCTCTACTGTCTGGCTTGCTTGGGATGTCCAGAGATCGCGTTATGTGGCCTTAAAAATTCAAAAGAGTGCTCAGCACTATACTGAAGCTGCCATGGATGAAATAAAGATTCTTAAACAGATTGCAGAAGGGGACCCTGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTCAAGCATTCTGGTCCTAATGGTCAGCATGTATGTATGGTCTTTGAATTTCTGGGTGACAACCTTCTGACACTTATCAAGTATAGTGATTACAGAGGAATTCCTCTCCCCATGGTTAAAGAAATTTGCTACCATATTTTGGTGGGCTTGGATTACCTACATCGAGAGCTTTCGATAATACATACAGACTTGAAGCCGGAGAACGTTTTGCTTCTGTCTATGATAGATCCGTCTAAGGATCACAGAAAATCAGGTGCCCCACTCGTCCTTCCTAGCACCAAGGACAGTTTTGTATCCAAGAATGAGGTCACGAAAGATAATGTTAGTTCGAATGGAAATCTGACCAAAAACCAAAAAAAGAAAATGCATAGAACGGCTAAGGTTGAGAATGAAATTATTGAGGAGGCTGACGGTTCTAAACACCATGATCTAAAATCAAATGTTGAGTCTGTTGAAGATAAACCCAGTAGTTTGGTGAGTAAAGACGAACCCACAAAGATTGTTGAAGTTGAGGATATTCCGCAAGGAAGTCAGAGTCAGAGGAAAAGTAGCCGTTCCATGAGGAAAAAGCTGCTTGCAGCTGTTGATCTAAAGTGCAAACTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTTACAAACGATATTCAAACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATACTCAACTCCGGCAGATTTATGGTCTTTTGCATGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGACAGGGATGAGGATCATCTGGCATTGATGATGGAACTTCTTGGAATGATGCCTCGCAAGATTGCGCTAGGGGGCCGCTATTCCCGGGATTTTTTCAATAGATATGGTGATCTAAGGCACATTCGTCGGTTGCGATTCTGGCCTCTTAATAAGGTGCTTATGGAGAAGTATAATTTCAGTGAGCAAGATGCAAAAGACATGACAAACTTCCTCGTTCCCATACTTGATTTTGTCCCCGAAAATAGGCCAACAGCTGCTCAGTGTCTTAGTCATACCTGGTTCAGTGCTGGTCCTCAGATTTTTCAACCCTGTACAACTACTGTTCAACCTGAGGCCATTGAGGGGGGAATGTCTGAAGAAACAAAGCGGGATAAGGCTCAGCAAGAAGCTGTGGAAGTTGGTGTGGGCAATATAGCCATTGATGGAACTCCAAAGCCACTGAAAAAGTCCCAATCTGTTAGGTGA	1596	0.4317	MAEERNGDKNDNSDYSSEDEGTEDYRRGGYHAVRIGDTFNNGCYVVQAKLGWGHFSTVWLAWDVQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLPMVKEICYHILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDHRKSGAPLVLPSTKDSFVSKNEVTKDNVSSNGNLTKNQKKKMHRTAKVENEIIEEADGSKHHDLKSNVESVEDKPSSLVSKDEPTKIVEVEDIPQGSQSQRKSSRSMRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYNFSEQDAKDMTNFLVPILDFVPENRPTAAQCLSHTWFSAGPQIFQPCTTTVQPEAIEGGMSEETKRDKAQQEAVEVGVGNIAIDGTPKPLKKSQSVR	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi01g0237	531	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-
	Mibi01g0237	531	FunFam	Serine/threonine-protein kinase SRPK-like protein	301	471	-	-
	Mibi01g0237	531	Gene3D	Transferase(Phosphotransferase) domain 1	127	472	-	-
	Mibi01g0237	531	MobiDBLite	consensus disorder prediction	215	236	-	-
	Mibi01g0237	531	SMART	serkin_6	44	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g0237	531	MobiDBLite	consensus disorder prediction	249	297	-	-
	Mibi01g0237	531	SUPERFAMILY	Protein kinase-like (PK-like)	39	480	IPR011009	-
	Mibi01g0237	531	Pfam	Protein kinase domain	44	184	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g0237	531	Pfam	Protein kinase domain	308	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g0237	531	MobiDBLite	consensus disorder prediction	1	23	-	-
	Mibi01g0237	531	ProSiteProfiles	Protein kinase domain profile.	44	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi01g0237	531	CDD	STKc_SRPK	33	471	-	-
	Mibi01g0237	531	MobiDBLite	consensus disorder prediction	249	281	-	-
	Mibi01g0237	531	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Mibi01g0237	531	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Mibi01g0237	531	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Mibi01g0237	531	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	8	496	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi01g0237	Mibi-ChrMibi01	2308989	2311750	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi01g0237	1	522	EF-hand Containing Proteins	AT5G22840	68.242	0.0	736

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Mibi01g0237		Pkinase	9.3e-20	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi01g0237	01	2308989	2311750	Mibi07g0379	07	4614907	4618146	CCT
	Mibi01g0237	01	2308989	2311750	Mibi01g0237	01	2308989	2311750	ECH