Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0216 ATGATTTCAAGAGCCACAACTTCTGGTTTCCCCAATAATCTCTCTCAAGGAGGTCTCTACAATATGATTAATCCTCCTGCTTCTGCTGGTGCTGGTAATGATAATAATCTGGTTTCAGCCTCATCAATTGAATCTGCTCCTTCCCAATCAGCTTCTCTCATGTTCAATATATCCGTCCTCAAAGACAAGCTTTCTCATGTTCAGACATTGGCAGGTATACTTATCTCCTCGGATCATCAGACAACCCTACCAGATTCAACAACTTTTGCAACCTTAGCCAGTATGAATTCTATAATCCAGGAATTCATAGTCACTGCCTCTTCCATGATGCTCACGTGCCAACACATGGTCCTTAACATCTCACCACCACCAGGTACTCATTGCACTACTGAATCCAACAATAACTTTGGCAATTATACAACTGGTGTGAATAACAATAATAATAGTGCTCAACAACAAAGAGGGCAAGGTGGTTTATTCTCTAGTCCTGAAGACCAAACCTTGGAATGGTTTGGTGGTGAAAGCTTTGATAATAATACCAATAATCTCAAGGAGGATGATATTAGTGTTGGGATTAGTGAAACGAAGAGGGAAATGTCTCAAGGGGATGAGACAATTGACTTAGCAAAGAACGAGGACATAATAGAATTGGATGCTGCTGATTTGTTGGCTAAGTACACGCATTATTGTCAGATTTGTGGGAAAGGGTTTAAGAGGGATGCGAATTTGAGGATGCATATGAGGGCTCATGGGGATGAGTACAAGACAAGTGCTGCTTTGAGCAATCCGATGAAGAATAGTAATAATAATAGAGGGAAAGAATGTTCTATGTTTAGGCCAAAGAAGTATTCGTGTCCACAAGAAGGGTGTAGGTGGAACCAGAAGCATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTATAAGAGAAGCCATTGTCCAAAGATGTATGTGTGCAAGAGGTGTAATTTGAAGCAATTTTCTGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGAGATCTGAAGTGGCAGTGTTCGTGTGGTACGACGTTTTCAAGGAAAGACAAGCTCATGGGACACGTGGCTTTGTTCGTTGGCCATGCTCCAGCTGTCACTGGCTTGTCGACTTCTGGAAGATTGCGGCAACTGCAGCAGGAAGATGGTACTTCATCAAGATCATGTGTTTGA 1206 0.4187 MISRATTSGFPNNLSQGGLYNMINPPASAGAGNDNNLVSASSIESAPSQSASLMFNISVLKDKLSHVQTLAGILISSDHQTTLPDSTTFATLASMNSIIQEFIVTASSMMLTCQHMVLNISPPPGTHCTTESNNNFGNYTTGVNNNNNSAQQQRGQGGLFSSPEDQTLEWFGGESFDNNTNNLKEDDISVGISETKREMSQGDETIDLAKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNSNNNRGKECSMFRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVTGLSTSGRLRQLQQEDGTSSRSCV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0216 401 SMART c2h2final6 283 316 IPR013087 -
Mibi01g0216 401 SMART c2h2final6 228 250 IPR013087 -
Mibi01g0216 401 SMART c2h2final6 321 343 IPR013087 -
Mibi01g0216 401 Gene3D Classic Zinc Finger 212 286 - -
Mibi01g0216 401 Gene3D Classic Zinc Finger 319 369 - -
Mibi01g0216 401 FunFam Zinc finger protein 574 227 252 - -
Mibi01g0216 401 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Mibi01g0216 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Mibi01g0216 401 SUPERFAMILY beta-beta-alpha zinc fingers 226 253 IPR036236 -
Mibi01g0216 401 Coils Coil 192 212 - -
Mibi01g0216 401 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 45 381 IPR044300 GO:0010044|GO:0010447
Mibi01g0216 401 Pfam Zinc finger, C2H2 type 228 250 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0216 Mibi-ChrMibi01 2117232 2118437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0216 50 376 C2H2 Transcription Factor Family AT5G22890 50.000 3.36e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g0216 zf-C2H2 0.0001 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0216 01 2117232 2118437 Mibi01g0216 01 2117232 2118437 ECH