Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0210 ATGCTCTCATTCCGTTCGTGCTTCGCTCTCTTTCGTCGTGAATTTTCTCTCTCACCCCCTAAAACCTTCGCCTTCAAGCCCATCCTCTTTCCTTCACATAGTCGCCGTTGCAACATGTCGTCGTCACGGCCTTCTGCCTTCGATGCACTCATGTCAGGGGCTCGTGCCGCTGCCAGGAAAAATCCCCAACCATCTTCTCCCAAGAAACGAAAGTCCCAGGTTTCTACTTCCACCCAAAACCCTAAACCCCTCAATAGCATGGAAGCTACTTCTCAGTCTTCCGAACCCAGTGGCGATTCTAAGTGCGCTGACATTAAAGATTCCGAGATTGTACAAGAGCCGACAAAAGAAGAAGACTTGAGCAACGGTCGGCTGACGGGGTCAGAGGGTGCACTTGCCGCGAAGAGAATGCGTGTTGTAGGTTCGCAGGAGAAGATTGCAGAGCTGAAGAAAAAAGCTTCTCTTTTGAAGAAGAAGCCTGCGGATTTTGACCTAAGTTCGATATCTGGTTGGGACAAGGGTGAACCTGTGCCCTTTCTGTTTCTCTGTTTGGCTTTTGATATGATTGCGGAGGAGACTGGACGCATTGTGATTACGGATATAGTGTGCAACATGCTTAGGACTGCCATGCACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTCTCCGCCAATAAGATTGCTCCCGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATTATCAAGGCCCTTGCAGAGGCCTGTGGAAGAACTGAGGCGCAGATCAAAAATCAATATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGATCATCTCAATCAATGATGCGGAAGCCTGATCCATTAACTATCAGGAAGGTTTTTAGCACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTCTGCTTCAGTCAAAGTTGCGGATTGGGTATGCTGAGCAAACACTTTTAGCAGCATTGGGCCAGGCTGCAGTATACACAGAAGGCCATTCTGTACCACCTCCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTGTGTACGACAAAATAATTCCTGCATTGCTTAGTGGTGGTGTGTGGAAACTTCCAGAGACATGTAACTTTACTCCTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGCATATCTGAAGTTCTAAATAAATTCCAGGATGTAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATGATGGATCGGTTGAGGTTTACAGTAGAAATGCTGAGCGGAACACTGGAAAGTTCCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAACCGTCTGTATCATCATTTGTTCTTGATTGTGAACTTGTTGCATATGATCGAGAAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTACTGTAAGTGACATAAAAGTCGATGTGTGCATATTTGCCTTTGATGTCTTGTATCTTAATGGCAAGCCACTACTTCAGGAGAACCTAAAAATCCGGAGAGAGCATCTCTATTCCTCTTTCGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAAATACAAAAGTTTCTGGATGCAGCAGTTGATGCTAGTTGTGAGGGGCTAATCATCAAAACTTTATATGAAGACGCTACTTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCACTGGATTTGGTACCTATTGCTGCTTTTCATGGCCGTGGGAAACGGACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGCAATGGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCTCCAACCAAAGTCTTATTATCGATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAACCTCTGAGGTGTGGGAGGTGAAAGCAGCCGACTTGACCATTAGCCCTGTTCACCGTGCTGCTGTAGGCATTGTGGATTCGGATAAGGGCATATCACTTCGGTTCCCTCGTCTAGTTCGAGTTCGAGATGACAAAGCTCCTGAACAAGCCACTTCATCTGATATGGTTGCTGAAATGTATTATGCTCAAAAGCACAATCACCCAAATAACCAGGATGATGAAGAAGATTGA 2376 0.4423 MLSFRSCFALFRREFSLSPPKTFAFKPILFPSHSRRCNMSSSRPSAFDALMSGARAAARKNPQPSSPKKRKSQVSTSTQNPKPLNSMEATSQSSEPSGDSKCADIKDSEIVQEPTKEEDLSNGRLTGSEGALAAKRMRVVGSQEKIAELKKKASLLKKKPADFDLSSISGWDKGEPVPFLFLCLAFDMIAEETGRIVITDIVCNMLRTAMHTTPEDLVAVVYLSANKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIRKVFSTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPPEIQSPLEEAAKIVKQVYSVLPVYDKIIPALLSGGVWKLPETCNFTPGVPVGPMLSKATKGISEVLNKFQDVEFTCEYKYDGERAQIHYMDDGSVEVYSRNAERNTGKFPDVVAAISRLKKPSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVTVSDIKVDVCIFAFDVLYLNGKPLLQENLKIRREHLYSSFEEEPGFLQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNGEEFQSICKIGTGFSEAMLEERSSSLRSKVILQPKSYYRYAETINPDVWFETSEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQATSSDMVAEMYYAQKHNHPNNQDDEED 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0210 791 Coils Coil 139 159 - -
Mibi01g0210 791 FunFam DNA ligase 420 626 - -
Mibi01g0210 791 Gene3D - 156 422 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi01g0210 791 Pfam ATP dependent DNA ligase C terminal region 649 760 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mibi01g0210 791 ProSitePatterns ATP-dependent DNA ligase signature 2. 598 624 IPR016059 GO:0003909
Mibi01g0210 791 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 412 630 - -
Mibi01g0210 791 ProSiteProfiles ATP-dependent DNA ligase family profile. 526 662 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi01g0210 791 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 61 789 - -
Mibi01g0210 791 CDD OBF_DNA_ligase_I 632 775 - -
Mibi01g0210 791 Gene3D DNA ligase/mRNA capping enzyme 449 574 - -
Mibi01g0210 791 Gene3D - 629 790 IPR012340 -
Mibi01g0210 791 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 444 452 IPR016059 GO:0003909
Mibi01g0210 791 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 236 775 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mibi01g0210 791 CDD Adenylation_DNA_ligase_I_Euk 409 627 - -
Mibi01g0210 791 SUPERFAMILY Nucleic acid-binding proteins 632 778 IPR012340 -
Mibi01g0210 791 Pfam ATP dependent DNA ligase domain 420 624 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi01g0210 791 FunFam DNA ligase 155 422 - -
Mibi01g0210 791 MobiDBLite consensus disorder prediction 759 791 - -
Mibi01g0210 791 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 163 411 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi01g0210 791 MobiDBLite consensus disorder prediction 67 99 - -
Mibi01g0210 791 FunFam DNA ligase 629 788 - -
Mibi01g0210 791 MobiDBLite consensus disorder prediction 53 105 - -
Mibi01g0210 791 Gene3D - 430 628 - -
Mibi01g0210 791 Pfam DNA ligase N terminus 178 353 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0210 Mibi-ChrMibi01 2035201 2041565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0210 39 791 Core DNA Replication Machinery Family AT1G08130 69.311 0.0 1087