Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0172 ATGTCAGAGGACATTGCAAATATGAAGGATCCTTTGTTTTTGGACAAGAGTTTCAATGGCCTATCGGATGAAATCTTTGATGATGTCATTAAGTTCTTTGATTTCCCGCTGGAAGATGTGGAAGCTAACATTGCGGGAGAAGAAGACTGGGATGCTCAGTTTAAAAGCATCGAAGAGCCTTCTTTTGATGTGTTCTCAGCATCTTCGTCTGAATTGTGCGGTAATACTCAAAATGACAATTTACACCTTGGGAGGGCTTTCTCTACTTGTAAGGAGATTTCCCATGCAGAACAAATGGCAGAGGATGGTAAGCCTAACATCTACCTTCATAAAAAGGATGAGCCCCAGTTTAGAACGTACAGCCCAGTTTCTGGATTTGAAAGCACAACATCTTCCTCTGGGGAGAGTTCCAACTTTGATCTACCCATGATACCAGGGAAGCGCCCGCGAGGGAGGCGCCGGCGCCTCTCCAGCTTCACGTCTCTATTGCCATTCCCGTTCACCTCTACATCACCAGCATTTAGAAAATGTCGAAAGGGAGCTGCCACAGGGCAGTTATTAAATGGGGTGAAAAGGAAGCAGAGGAAGAAGGGTGTCTGCATTATCTCAAGTGATGTCAAGGTGAACAAATCATCATTAGGAGATTCAGCTGCGCCTAGAAAATGCATGCATTGTGAAGCGACCAAGACTCCACAATGGAGGGAGGGGCCTATGGGTCCAAAAACTCTCTGTAATGCATGTGGGGTTCGATACAGGTCAGGTCGGCTGTTACCTGAATACCGCCCTGCGGCTAGTCCCACTTTTGTACCATCTCTGCATTCCAACTCTCACAAGAAGGTCGTAGAGATGAGAGACTCAGCCATGCAAGACTCTAGGGCTTCTCTTTCCGGTCTCTGTTTGTCATCGATCTAA 912 0.466 MSEDIANMKDPLFLDKSFNGLSDEIFDDVIKFFDFPLEDVEANIAGEEDWDAQFKSIEEPSFDVFSASSSELCGNTQNDNLHLGRAFSTCKEISHAEQMAEDGKPNIYLHKKDEPQFRTYSPVSGFESTTSSSGESSNFDLPMIPGKRPRGRRRRLSSFTSLLPFPFTSTSPAFRKCRKGAATGQLLNGVKRKQRKKGVCIISSDVKVNKSSLGDSAAPRKCMHCEATKTPQWREGPMGPKTLCNACGVRYRSGRLLPEYRPAASPTFVPSLHSNSHKKVVEMRDSAMQDSRASLSGLCLSSI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0172 303 PANTHER GATA TRANSCRIPTION FACTOR 45 288 - -
Mibi01g0172 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 279 - -
Mibi01g0172 303 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Mibi01g0172 303 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Mibi01g0172 303 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Mibi01g0172 303 Gene3D - 213 293 IPR013088 GO:0006355|GO:0008270
Mibi01g0172 303 MobiDBLite consensus disorder prediction 123 139 - -
Mibi01g0172 303 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Mibi01g0172 303 FunFam GATA transcription factor 212 296 - -
Mibi01g0172 303 MobiDBLite consensus disorder prediction 123 152 - -
Mibi01g0172 303 Pfam GATA zinc finger 222 256 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0172 Mibi-ChrMibi01 1682921 1686466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0172 18 284 C2C2-Gata Transcription Factor Family AT1G08010 37.011 2.18e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi01g0172 GATA 6.5e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0172 01 1682921 1686466 Mibi01g0172 01 1682921 1686466 ECH