Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0171 ATGAAGGAAGCTGAGAAAAGCTTGGATCCACAACTCTGGCATGCGTGCGCCGGAGGTATGGTTCAAATGCCTCCGGTTAACTCCAAAGTCTTTTACTTTCCTCAAGGCCACGCAGAGCACGCTCAGGCCAACCTTAATTTCCCCCTCACCTTAAGGATTCCACCTCTTATTCTTTGTCGTGTGGTTTCCCTTAAATTCTTGGCCGACCCAGAAACTGATGAAGTTTATGCTAAGATAAGGCTTGTTCCTGTGAGAAATCCCGAGCTTGATTATGATGACGGTGACGGTGACGGTAATGGATCGGAAAATTCAGAAAAGCCAGCATCTTTTGCCAAGACATTGACTCAATCTGATGCCAACAATGGTGGGGGCTTCTCTGTTCCAAGGTATTGCGCAGAAACTATCTTCCCACGGCTTGATTACTCTGCGGAACCACCTGTTCAGACGGTGGCAGCCAAGGATGTTCATGGGGAGATTTGGAATTTCAGACATATATATAGGGGGACACCTCGTCGGCACTTACTAACCTCTGGCTGGAGCACTTTCGTGAAGCAAAAGAAACTTGTTGCTGGGGATTCTATTGTTTTCTTTAGGGCTGAAAAAGGCGACCTCGGTGTCGGAATCCGCCGTGCGAAACGTGGCGGTTTTGGTAGCCGGATGCAAACCCCGGCCGCCGGATGGCGCGGTGGTTTGGGGCCCTGTGGGGGTTTCTCCTATTTTCTGAGAGAGGAGAACAAATTACTGACTAATTCTTGTGGGAATTCTAAAGTGAGGCCTGAATCTGTGATGGAAGCTATGACACTGGCTGCTAGTGGTCAGCTATTTGAAGTAGTTTATTATCCTCGAGCTAGTACTCCTGAGTTTTGTGTTAAGGCTGCTTCTGTGAGGGCTGCTATGAGAACTCAATGGTGCTGTGGCATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCCAGAATCAGCTGGTTTATGGGGACCATTTCTTCTGTTCAGGTTGCTGATCCTGTGGGTTGGCCCAATTCACCCTGGCGACTTCTTCAGGTTACTTGGGATGAACCAGATCTGCTGCAGAATGTGAAGCGTGTTAGCCCATGGTTGGTAGAATTAGTTTCAAACATGCCAGTCATTCATTTCACACCTTTTTCCGTGCCAAGGAAGAAGCTACGGCTTCCACAGCACGCAGACTTCCACATCGATGGTCAATTTTCATTACCGACATTTTCAGGCAACCCCCTCGGGCCTAGTAGCCCCTCAAGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTTTTTCGGATCTCCACCTTAACAATAAACTACAGTTGGGGTTGCTTCCAACTAACATCCAGCAGCTTGATATACATCCTGGGATGTCCAATGGCAAGATGGCAAACAATGGTGAGAACAATCAAAGCTTGTCTTGCTTGCTGACCTTGGGAAGTTCTTGTAAGAGTTTGGAGAAATCTGATAATGTGAACAGACACCGGTTTTTTCTTTTCGGTCAGCCAATACTCACTGAGCAACAAATATCTCAAAGCCGTTCTACTGATAATTTGTCTCAGAATGTCAGTGAAAAAGATCTGCCAGATGAAAATAGAGAAATGACAGAGTGCGAATTGCGTGATTCACAATCTGGTCTTTCTCAGCAGTTTTCAGCTGGAAAATCTTCTAATGTTGAGTTTTCTTGGCAATTAGGCTTGGATAATGGTCATTGCAAGGTTTTCATGGAATCTGAGGATGTGGGATGCACCCTCGACCTATCCTGTCTTGGTTCTTATGAAGAGCTTTACAGAAGACTGGCCAACATGTTTGGAATTGAAAGATCTACAATGTTGCGCCATGTACTCTACTATGATGCATCAGGTGCTGTGAAGCAAACTGGACTAGAACCCTTCAGTGACTTCATGAAAACAGCAAAGAGATTGACAATTCTGACCGATTCTGGCAGCAAAGAGTTTTAA 1995 0.4612 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQANLNFPLTLRIPPLILCRVVSLKFLADPETDEVYAKIRLVPVRNPELDYDDGDGDGNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVAAKDVHGEIWNFRHIYRGTPRRHLLTSGWSTFVKQKKLVAGDSIVFFRAEKGDLGVGIRRAKRGGFGSRMQTPAAGWRGGLGPCGGFSYFLREENKLLTNSCGNSKVRPESVMEAMTLAASGQLFEVVYYPRASTPEFCVKAASVRAAMRTQWCCGMRFKMAFETEDSSRISWFMGTISSVQVADPVGWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHFTPFSVPRKKLRLPQHADFHIDGQFSLPTFSGNPLGPSSPSSCLSDNAPAGIQGARHAQFGISFSDLHLNNKLQLGLLPTNIQQLDIHPGMSNGKMANNGENNQSLSCLLTLGSSCKSLEKSDNVNRHRFFLFGQPILTEQQISQSRSTDNLSQNVSEKDLPDENREMTECELRDSQSGLSQQFSAGKSSNVEFSWQLGLDNGHCKVFMESEDVGCTLDLSCLGSYEELYRRLANMFGIERSTMLRHVLYYDASGAVKQTGLEPFSDFMKTAKRLTILTDSGSKEF 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0171 664 SMART B3_2 110 212 IPR003340 GO:0003677
Mibi01g0171 664 MobiDBLite consensus disorder prediction 521 546 - -
Mibi01g0171 664 SUPERFAMILY DNA-binding pseudobarrel domain 106 212 IPR015300 -
Mibi01g0171 664 Pfam Auxin response factor 265 348 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi01g0171 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 659 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi01g0171 664 CDD B3_DNA 109 210 IPR003340 GO:0003677
Mibi01g0171 664 FunFam Auxin response factor 108 212 - -
Mibi01g0171 664 Gene3D - 108 212 IPR015300 -
Mibi01g0171 664 MobiDBLite consensus disorder prediction 88 108 - -
Mibi01g0171 664 FunFam Auxin response factor 303 376 - -
Mibi01g0171 664 Gene3D - 303 375 - -
Mibi01g0171 664 Gene3D - 579 664 - -
Mibi01g0171 664 ProSiteProfiles PB1 domain profile. 580 660 IPR000270 GO:0005515
Mibi01g0171 664 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Mibi01g0171 664 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0171 Mibi-ChrMibi01 1671591 1674351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0171 4 662 B3 DNA Binding Superfamily AT4G30080 58.971 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi01g0171 B3 3.8e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0171 01 1671591 1674351 Mibi07g0296 07 3670096 3673073 CCT
Mibi01g0171 01 1671591 1674351 Mibi01g0171 01 1671591 1674351 ECH