Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0158 ATGAGTTCTGAGGAAAAGGCTGTGAGTGAAGGACTTCACCCTGCTTCGTGCCTAAGAACAGTTTCTCTTCCAGTGCCTAAGGTTGATGATCCAATGGGTGTGCATGAGGAATCAACACGTTCCAGTCATTGGAAGCGGCAAAATCTACTTCTAGAAATACCCCCAAGAACATCAGAAGAGCATTGTCAAGATTTTGTTGGAATTAAGATGCCAATGACTCCAAGTCCCACTCCCACTCCCAAGAAAGTGAATTTTCTTGTGTCCTCACGCTCTGTTGATGCCCCGATTCACAATTCTTCCGGGCCGCCTTCTGCATCAAGAGGCAAACCATCCATTAAAAGTATCTTGCCAAAGTTAAACTTCAAGCATAAGACATCGTCAGATATTGAAAAAGCTATTACCGCAGCTCCAGAAAGTTCCTCTTCAGTCCCTCGAGAAAAGCTTTCAATTGCGTCATCATTGTCCCTTACTAAGATATTTACACCTAGAATAAAGAGAACGTCATCGTTACCAGTAGATGAACTTCAGTCAAACTCAGAATCTGTTCATGCTGGAAGTGCTGGCGGATCTCCATATAGAAAAAAGGTGCAGGGGCAGATAGCCCGCTCTCTGTCAATGCCTCTCACTGATCTAGATAAGGGCATAAGGAGAATGGATTCGTTTTTCCGTGTTATTCCTTCCACTCCCCATGTAAAGGGAAAAAGGGAATTGTTGACCAAATCCCCGTCCAAGGATACTGAAAAAGACGAAGACGACGACGAAGGTGAAGATATAGCTGAAGAAGATGCAGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGTGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTCGCTCTGGCTCACCAAGAATGCGCCATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTCACACTCTTAAGGATCCAAAATGTTGCACTGAATGCAGGGGCTAGTAGGTCTCAGCAGGCAGATGCAAGTGCATACAGGGTTTGGCAAGAAGTTCCTGTGCTTGTCATTGTGAGCATGCTAGCTTATTTCTGTTTTCTTGAGCAACTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAATAGCAAGTTCATCTGGTTTTATGCATCCGCCCAATTCGCTCTTGTGGTTCTTTTTGCACATATATTTTACTCACTGGTTCACGTGCAAGCAGTTTTGGCGATCCTACTTGCAACTTTTGCTGGGTTTGGTATAGTGATGAGTGGAAGCTCGGTTCTTGTTGAAATTGCTCGATGGAGAAGAAGATGGCTGGCATCATCAGAGCGGCATCAAGCACATTCAGGCCCTCCCAGTGGCGGTCAGGCAGTGGCACTAAATCAACAAAACTCAGATTAG 1482 0.4494 MSSEEKAVSEGLHPASCLRTVSLPVPKVDDPMGVHEESTRSSHWKRQNLLLEIPPRTSEEHCQDFVGIKMPMTPSPTPTPKKVNFLVSSRSVDAPIHNSSGPPSASRGKPSIKSILPKLNFKHKTSSDIEKAITAAPESSSSVPREKLSIASSLSLTKIFTPRIKRTSSLPVDELQSNSESVHAGSAGGSPYRKKVQGQIARSLSMPLTDLDKGIRRMDSFFRVIPSTPHVKGKRELLTKSPSKDTEKDEDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVALNAGASRSQQADASAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVNSKFIWFYASAQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGIVMSGSSVLVEIARWRRRWLASSERHQAHSGPPSGGQAVALNQQNSD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0158 493 SMART ringv_2 264 313 IPR011016 GO:0008270
Mibi01g0158 493 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Mibi01g0158 493 SUPERFAMILY RING/U-box 261 316 - -
Mibi01g0158 493 MobiDBLite consensus disorder prediction 233 247 - -
Mibi01g0158 493 MobiDBLite consensus disorder prediction 470 493 - -
Mibi01g0158 493 MobiDBLite consensus disorder prediction 233 257 - -
Mibi01g0158 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 320 IPR013083 -
Mibi01g0158 493 CDD RING_CH-C4HC3_MARCH 265 313 - -
Mibi01g0158 493 MobiDBLite consensus disorder prediction 171 185 - -
Mibi01g0158 493 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Mibi01g0158 493 PANTHER OS02G0165000 PROTEIN 36 474 - -
Mibi01g0158 493 MobiDBLite consensus disorder prediction 171 198 - -
Mibi01g0158 493 MobiDBLite consensus disorder prediction 24 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0158 Mibi-ChrMibi01 1593934 1598417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0158 192 319 C3H Transcription Factor Family AT2G37950 30.233 2.66e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0158 01 1593934 1598417 Mibi07g0278 07 3488572 3492301 CCT
Mibi01g0158 01 1593934 1598417 Mibi01g0158 01 1593934 1598417 ECH