Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0147 ATGATGCCTTCAGATTCTCTCTCTGTTCCCTCCACCCTTAACACCTTCCTGGACCCTAACTCCAACCCTAACCCTAATTCAAATAATTCTGTACATGTCAAGAAAAGGAGGAATCTCCCCGGCACACCAGATCCAGATGCGGAAGTGATAGCACTGTCTCCAAAGTCACTCATGGCCACCAATCGCTTCATATGTGAAATCTGCAATAAGGGATTCCAGAGGGACCAGAACTTGCAGCTGCACCGCCGTGGCCACAATCTCCCATGGAAGCTCCGGCAGAGAAGCAACAAAGAGGTGGTGAGGAAGAAGGTTTATGTTTGCCCTGAGAAGACATGCGTCCACCATGATCCCTCCAGAGCCCTTGGAGACCTCACCGGCATCAAGAAACACTTCAGCCGAAAGCACGGCGAGAAAAAGTGGAAGTGTGATAAATGCTCCAAAAAGTATGCTGTTCAGTCTGATTGGAAAGCACATAGCAAGATTTGTGGCACTAGAGAGTACAAATGTGACTGCGGCACCATTTTCTCCAGGAAGGACAGCTTCATAACACACAGAGCTTTCTGTGACGCCTTGGGAGAAGAAAGTGCGATGAGAACATTAACAACAATACCTTCAGCATTCACTAACCTGAGAACTGACCACCCCTTGATGAGCATGAATCATCAGCAGCAAACACCACGTATCATCCCAGAGACATTTCAAGGGCTTCATCCAGAAATATTTGGAGGTAATTTCGGTCAGCTCAATCATCACCACCTCAGCGTGGGAAGCAACAATTTGAATTCCCACTTTCCGGAATTAGTCCAAGGGATAGACATGTTTGGGACACAGTGGGCAAACCGATACCCAGAAGGTGAAGTAGCATCACTCACAAGTGACATCAACAACAATAACATGTGTGTGCCTGGAATAGTGACACATGGACTGAAGCAGGAACCAGAAGAAAACAAAGCAGAATTGTCGCATAGTATAGGAGCTTTGTACTCCTCTCATCATCACATTCAGAACTACTCAGGAGGAGGAAGTCACATGTCAGCCACTGCACTTTTGCAGAAAGCAGCACAAATAATCGGATCTACAACCGCTAACAACAACAGTAATGCAATCATTAACGATACATCCTCCTTCATCAACCACTTTGGATTCATGGGATCCGCTGTTTCAAACACATCCTCCAACAACACTGCTAATAACCTTGATCTTCACAATCTTCTCAATCTCAAGCAAACGAATCACACAAGCGCCAACCTCGTCCTTGGAGGAGGTGGCGGGTTTCTGTTAAATGACTCAAACCCGCCGCCAAGATGGTTTGCGAGCTTAACCACCAATAGGGGTCTGTGTTCAGGCTCGAAAGAAGAGGAGCTAGGTTTAACCAGAGACTTTCTTGGCGTTGGTGGTGACTCCATGAACGGACCCTTTCTGGAGCAAGAGTTAGCCAAGTTCAGTTCAGTAGGTTCAGCCTCAGCTTCCGCCATGGACCTGACTCAGTACAGTGCGCATCACTGA 1506 0.4714 MMPSDSLSVPSTLNTFLDPNSNPNPNSNNSVHVKKRRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVRKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALGEESAMRTLTTIPSAFTNLRTDHPLMSMNHQQQTPRIIPETFQGLHPEIFGGNFGQLNHHHLSVGSNNLNSHFPELVQGIDMFGTQWANRYPEGEVASLTSDINNNNMCVPGIVTHGLKQEPEENKAELSHSIGALYSSHHHIQNYSGGGSHMSATALLQKAAQIIGSTTANNNSNAIINDTSSFINHFGFMGSAVSNTSSNNTANNLDLHNLLNLKQTNHTSANLVLGGGGGFLLNDSNPPPRWFASLTTNRGLCSGSKEEELGLTRDFLGVGGDSMNGPFLEQELAKFSSVGSASASAMDLTQYSAHH 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0147 501 MobiDBLite consensus disorder prediction 1 35 - -
Mibi01g0147 501 FunFam protein indeterminate-domain 12-like 42 111 - -
Mibi01g0147 501 MobiDBLite consensus disorder prediction 1 46 - -
Mibi01g0147 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Mibi01g0147 501 Gene3D Classic Zinc Finger 118 196 - -
Mibi01g0147 501 Gene3D Classic Zinc Finger 42 116 - -
Mibi01g0147 501 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Mibi01g0147 501 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Mibi01g0147 501 SMART c2h2final6 63 85 IPR013087 -
Mibi01g0147 501 SMART c2h2final6 105 135 IPR013087 -
Mibi01g0147 501 SMART c2h2final6 140 160 IPR013087 -
Mibi01g0147 501 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Mibi01g0147 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 476 IPR031140 -
Mibi01g0147 501 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0147 Mibi-ChrMibi01 1532292 1534508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0147 1 356 IDZ Gene Family AT3G45260 54.111 2.00e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g0147 zf-C2H2_jaz 7.3e-05 CL0361