Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0136 ATGGCGATTTCATCTCACGACGAAGACGACCTCCAAATCCTACTTTCTGAGCAAACACATTCGTTCATGATGGCTAAAACCCTAGCTTCCGATATCGATTTGGCCTTCGAACTCCAAATGCAAGAAGCGGTTAATGCCTCCCTCGGTTCCCAAACCCCTGTTCCACCCCCAGACGCTCTCATTCCCTCCGATGAAGACAAAGACGGCGACGTTCTTGGCTTGGCCGCCACCCTTATGCTCGAAGACGTTCACAGATTCCCCCAAGAGTCCAAAGACCTCCAACTATGCCATGAGGAGATCAGGAAGATGAGGGAAGATCTGGACCGTCGGGCTTTCGATCATACTTTCGCCAGAGACATCCTCAACATTCCCGAAGACCAGTGGAAAACTTATGGTGACAATTACCATAGGCCCTACTCTGCTGACGCACCATCGTCGTCATCTTCTTCGTCCTCGACTGCCAAGTGTTTCAATGTTTACTGCAAGGGCTTGGTGAGTGAAGAATGGGTTAAAGATTTGCATGTAAAGGTGGCTTCTGTTGGGGTTTCCATTTCTGATTCTATGGGCTTTGTCATATTTGAAGTTAAGAAGCCTCTTGAAGTGTTTGAAGCCGGCGGTGTCTTGCTCAGCAATGAGTGTGCTGAGCTGCTTGCTATGGTTGAAGGCCTTGATGCCGCTCTTAACTTGGGATTGCAAAGGGTTACCTTTTCCTTCGACGACCATATGCTTTACCAATATGTCACTGGCAGAGTGCAACCAAGCGAGCATGATAAGTTTGCTGGTTTACTCTCTCAGGTATCTCATCTTCAAAGGAGATTCGTATATTGTGAACCGTCTCTTGTTGAACGAGACCGTATTAGGTATGCCTTTCAATCTGCAAGAGAAGCAATAGTTTCTCAAATCAAGTGGCCTGCAGAAAGTGATAACGGCAAAAGCTTCAAGGAAACCTGTGCAATTTGTTTTGAAGACACTGATGTTGAGAAAATGTTTTCAGTGGACCACTGCTTGCACAGATATTGTTTTTCATGTATGAAACATCATGTGGAGGCGAAGCTGCTTAATGGGATGATGGCAGAGTGCCCTCACGAAGGTTGTAAATCTGAGGTGACTTTTGATAGCTGCAAAGAAATTTTAGCACCAGAATTAGTTGAAGTTGCCAGCGAAAGGATCAAGGAATCAGCTATTCCCGTTACAGAGAAATTGTACTGCCCATTTCCTAGGTGCTCAGCATTAATGTCAAAGCACGAGGTCTTAGAATACACTAGGACCACATATGTTGGAGCTGAAGAATGTGGAGTTAGGAAATGCATTAAATGTCGTCGATTTTTCTGTATCAATTGCAAGGTTCCATGGCATGATAACATGACCTGCGATGGCTATAAAAATTCCAATCTTTTTCGCCAAGCAGAAGATTCTAAGCTGAAGTCTCTTGCCTCCAAGAAACACTGGCGGCAGTGTGTAAAGTGCAATCATATAATTGAACTAGCCGAAGGTTGCTATCATATCACCTGCAGATGTGGGTATGAATTTTGCTATACATGTGGAGCAAAGTGGGAGAACAAGAAAGCAACATGCTCTTGTCCGATCTGGGATGAGCATAACATTATACGTGATCGACGTCGAGGAAGATGA 1632 0.4498 MAISSHDEDDLQILLSEQTHSFMMAKTLASDIDLAFELQMQEAVNASLGSQTPVPPPDALIPSDEDKDGDVLGLAATLMLEDVHRFPQESKDLQLCHEEIRKMREDLDRRAFDHTFARDILNIPEDQWKTYGDNYHRPYSADAPSSSSSSSSTAKCFNVYCKGLVSEEWVKDLHVKVASVGVSISDSMGFVIFEVKKPLEVFEAGGVLLSNECAELLAMVEGLDAALNLGLQRVTFSFDDHMLYQYVTGRVQPSEHDKFAGLLSQVSHLQRRFVYCEPSLVERDRIRYAFQSAREAIVSQIKWPAESDNGKSFKETCAICFEDTDVEKMFSVDHCLHRYCFSCMKHHVEAKLLNGMMAECPHEGCKSEVTFDSCKEILAPELVEVASERIKESAIPVTEKLYCPFPRCSALMSKHEVLEYTRTTYVGAEECGVRKCIKCRRFFCINCKVPWHDNMTCDGYKNSNLFRQAEDSKLKSLASKKHWRQCVKCNHIIELAEGCYHITCRCGYEFCYTCGAKWENKKATCSCPIWDEHNIIRDRRRGR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0136 543 Pfam IBR domain, a half RING-finger domain 400 457 IPR002867 -
Mibi01g0136 543 Pfam IBR domain, a half RING-finger domain 471 525 IPR002867 -
Mibi01g0136 543 FunFam RBR-type E3 ubiquitin transferase 455 543 - -
Mibi01g0136 543 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Mibi01g0136 543 Gene3D - 455 543 - -
Mibi01g0136 543 ProSiteProfiles TRIAD supradomain profile. 313 531 IPR044066 -
Mibi01g0136 543 SUPERFAMILY RING/U-box 315 396 - -
Mibi01g0136 543 SMART ibrneu5 467 527 IPR002867 -
Mibi01g0136 543 SMART ibrneu5 384 457 IPR002867 -
Mibi01g0136 543 Pfam Reverse transcriptase-like 178 296 IPR002156 GO:0003676|GO:0004523
Mibi01g0136 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 394 IPR013083 -
Mibi01g0136 543 SUPERFAMILY RING/U-box 470 534 - -
Mibi01g0136 543 ProSiteProfiles Zinc finger RING-type profile. 317 361 IPR001841 -
Mibi01g0136 543 Gene3D - 169 302 IPR036397 GO:0003676
Mibi01g0136 543 FunFam RBR-type E3 ubiquitin transferase 312 397 - -
Mibi01g0136 543 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 156 532 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0136 Mibi-ChrMibi01 1438776 1441030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0136 123 516 C3H Transcription Factor Family AT2G19610 34.750 2.27e-73 238