Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0043 ATGGCCGAAACCCCTGCCAAGTCTCTTCGGTCTCCCACCAAATGCAAACAACAATCCCATTTGGATGCTGATTCCCCACCCTCTGTAAACCACCCCCTTACCCCACAATCTGCAGCTCCTCGTAGATCGACCCGCCGTAAGTTGCCGGCCTTCCATTATTCCAATCCTCTCAATCGCTATGACGAACTTTGTGAACATCCGTCAAAAACTCCTAACAAGGATAAAGCTCGGGAAAGGAGAAATTTGAACAGGTCTCGTCGATCAATTGATTGTGCTGGAGAGGCCTGCGAAGATAAAGTGATAACCCGTAGAAATAGGACTAGGGAAAACGGTCCAATCGGCAAAGCACATAAAAAAGAGAGCAACTCTAGATCTGCAAAATGCCCGGCATCTACTCCAAGGGGCGAAACTTCGAAGAGGAGAAATGATAAAGATTCAGATTCAGCTGAAGTTTCTATCGCCCCAGTGTCTCCTGATCATTCTGAAACTAAGAAGAGGAAGAGGGTTGATGAAAGATGGGTTGTTACAAAAGCTATGGTTGCTAGAAATGGGAAATCTGAGAAGGGGCAAAAGAGCAATACGTTTCCTAAGAGACGGGTGTATTATAAAAAAGTGGTATATGATGGGGCTGAGTTTGAAGTAGGCGATGATGTTTATGTGAAGAGGAGAGAAGACATCGACTCAGATAACGAATACCCAGAAGTGGAGGAATGTAAGTTATGTTTTAGCTCTGGGGATGATGTTATGATTGAGTGTGACGATTGTTTAGGTGGCTTTCATTTGAAATGTTTGACTCCACCCTTAAAGGAGGTTCCTGAAGGAGATTGGATTTGTGGATTTTGTGAGGCTCGTAAGATAGGTAGAGACTTTAGCTTTCCCATGCCTCCGGAGGGCAAGAAGCTCGTTAGGACATTGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTTCTCACATTGAAAGTATATGGAAAGAAGGGGATGGTACCTATTGTTGTCGTGTCAGGTGGTATGTGATCCCGGAAGAGACAGCTATTGGGAGACAACCTCATAATCTGAAGAGGGAGCTATACAGAACAAATGATTTTGCAGACATTGAGATGGAATCTATCATTAGACATTGCTTTGTTATGACTCCCAAAGAATTTGCCAAGGCCAACGAGGGAGATGATATTTTCTTTTGTGAATATGAATATGACATTCATTGGCATGCTTTCAAGCGTCTTGCCGAGATTGACAGTGACAATGAGGTTGCTGAACAATCTGACTGTGATGAAGAATGGAACCTTTGCAAGGGATCAGACTCTGATACAGATGATGATGTTGAGTATGATGCAGAGGATATAAAAGATCCACAACCTCATTCGTCATCAAATCGTGCACCAGCTGCAAATCTACGCAAGGGACAATTTTTTGGCCTTCAAAAGATAGGCACAAAAAATATTCCACAGTTTATAAGGAATCACAAACAAACTGATATAGAGAGAGCAAAGGCTATGCTGTTGCTGGCATCGTTACCTAAATATTTACCTTGTAGGAATAAAGAAATGGAGGAGATAACCTCATTTGTAAAAGGTGCCATCTGTGATGATCAATGTCTAGGACGTTGTTTGTATATCCACGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGGAGTTTGAGGTTAGAAGTTGATGCAGGAACCATAAGGCCGTACTGTTTTGTGGAAATAAATGGTTTGAAATTGGCGTCTCCCGAGAATATTTACAGGGTCATATACGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCCCTTCACTTGTTAAATGAGAGATTTGTGGAAGGCAAGAAAACCGGAGAAAAGGCTGATCAGCCATGCATTCTTCTAATTGATGAACTTGATCTTCTTGTGACCAGAAATCAGTCGGTGCTTTATAATATTCTTGATTGGCCTACTAAGCCACATTCCAAACTAATTGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCTCGCATATCAAGTCGAATGGGCATCCAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCTTGAAGGGAGTAGATGTATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGGGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCTGCAGAAATTGCAGATTATCGTATGAAGAAGCTGCATTCAAATTCTAAGCTAGCTGCAGCAGGGAAGGGACTGGTTGGTATGGCAGATGTTGAAGCTGCCATTCAAGAAATGTTTCAGGCTCCTCATATTCAAGTGATGAAAAGCTGTTCTAGACTTGGCAAAATCTTTTTGACAGCCATGGTACACGAGCTTTATAAAACAGGAATGGGCGAAACCACTTTTGAGAAGTTGGCAATGACGGTATCGTGTATCTGCGCCAGCAATGGAGAGGTTTTTCCTGGATACGATACGCTCCTGCAAGTTGGATGTCGGCTAGGCGAATCCAGGATTCTTTTGTGTGAAGCAGGTTCCAAGCACAGGTTGCAAAAGCTGCAGCTCAACTTCCCTAGTGATGATGTGGCATTTGCGTTGAGAAACTCTGAGGATTTATCCTGGCTGGCCAAGTATCTACTTTAA 2673 0.4314 MAETPAKSLRSPTKCKQQSHLDADSPPSVNHPLTPQSAAPRRSTRRKLPAFHYSNPLNRYDELCEHPSKTPNKDKARERRNLNRSRRSIDCAGEACEDKVITRRNRTRENGPIGKAHKKESNSRSAKCPASTPRGETSKRRNDKDSDSAEVSIAPVSPDHSETKKRKRVDERWVVTKAMVARNGKSEKGQKSNTFPKRRVYYKKVVYDGAEFEVGDDVYVKRREDIDSDNEYPEVEECKLCFSSGDDVMIECDDCLGGFHLKCLTPPLKEVPEGDWICGFCEARKIGRDFSFPMPPEGKKLVRTLREKLLSSDLWASHIESIWKEGDGTYCCRVRWYVIPEETAIGRQPHNLKRELYRTNDFADIEMESIIRHCFVMTPKEFAKANEGDDIFFCEYEYDIHWHAFKRLAEIDSDNEVAEQSDCDEEWNLCKGSDSDTDDDVEYDAEDIKDPQPHSSSNRAPAANLRKGQFFGLQKIGTKNIPQFIRNHKQTDIERAKAMLLLASLPKYLPCRNKEMEEITSFVKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRLEVDAGTIRPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEKADQPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGVDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKKLHSNSKLAAAGKGLVGMADVEAAIQEMFQAPHIQVMKSCSRLGKIFLTAMVHELYKTGMGETTFEKLAMTVSCICASNGEVFPGYDTLLQVGCRLGESRILLCEAGSKHRLQKLQLNFPSDDVAFALRNSEDLSWLAKYLL 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0043 890 FunFam Origin recognition complex subunit 1 301 492 - -
Mibi01g0043 890 Gene3D - 305 491 IPR043151 -
Mibi01g0043 890 SMART AAA_5 533 687 IPR003593 -
Mibi01g0043 890 Pfam PHD-finger 238 283 IPR019787 -
Mibi01g0043 890 SUPERFAMILY FYVE/PHD zinc finger 227 285 IPR011011 -
Mibi01g0043 890 MobiDBLite consensus disorder prediction 10 41 - -
Mibi01g0043 890 ProSitePatterns Zinc finger PHD-type signature. 238 281 IPR019786 -
Mibi01g0043 890 SMART PHD_3 237 282 IPR001965 -
Mibi01g0043 890 SMART BAH_4 210 409 IPR001025 GO:0003682
Mibi01g0043 890 MobiDBLite consensus disorder prediction 134 148 - -
Mibi01g0043 890 MobiDBLite consensus disorder prediction 428 461 - -
Mibi01g0043 890 ProSiteProfiles Zinc finger PHD-type profile. 235 284 IPR019787 -
Mibi01g0043 890 Gene3D - 687 761 - -
Mibi01g0043 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 289 IPR013083 -
Mibi01g0043 890 Gene3D - 492 686 IPR027417 -
Mibi01g0043 890 MobiDBLite consensus disorder prediction 62 124 - -
Mibi01g0043 890 Pfam BAH domain 319 405 IPR001025 GO:0003682
Mibi01g0043 890 FunFam Origin recognition complex subunit 1 686 778 - -
Mibi01g0043 890 Pfam AAA lid domain 711 745 IPR041083 -
Mibi01g0043 890 ProSiteProfiles BAH domain profile. 293 409 IPR001025 GO:0003682
Mibi01g0043 890 MobiDBLite consensus disorder prediction 1 170 - -
Mibi01g0043 890 CDD AAA 514 690 - -
Mibi01g0043 890 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 342 885 - -
Mibi01g0043 890 FunFam Origin recognition complex subunit 1 233 300 - -
Mibi01g0043 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 746 IPR027417 -
Mibi01g0043 890 FunFam Origin recognition complex subunit 1 490 689 - -
Mibi01g0043 890 Pfam ATPase family associated with various cellular activities (AAA) 538 683 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0043 Mibi-ChrMibi01 674614 686777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0043 2 889 Core DNA Replication Machinery Family AT4G14700 58.444 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi01g0043 AAA 8.3e-20 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0043 01 674614 686777 Mibi01g0043 01 674614 686777 ECH