Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0042 ATGGCTATGGCGACGACGGCTTCCCAGGGTTATCATCAACCTTCCTCAATTGAGGAAGTTCGAACTCTCTGGATTGGGGATTTGCAGTACTGGGTCGACGAAAATTACCTTACTCACTGCTTCGCCCACACCGGAGAGGTAGTTTCCATAAAGATCATACGTAACAAGATAACTGGACAGCCTGAGGGCTATGGGTTTGTGGAGTTTGTTTCTCATGCGGCAGCAGAAAGAATTCTGCAAACTTACAATGGGACGCAAATGCCTGGAACAGAGCAGACTTTCAGGTTGAATTGGGCATCTTTTGGTATTGGGGAGCGACGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTGGGGGACCTAGCACCTGATGTTACAGATTACCTTCTCCAGGAGACATTCAGAGCACATTATCCTTCAGTTAGAGGTGCTAAAGTAGTGACTGATCCTAATACAGGGCGTTCCAAGGGATATGGGTTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGCGTTTATTGCTCAAGTAGGCCAATGCGTATCAGTGCTGCAACTCCAAAGAAGACCACAGGTTTCCAACAGCAATATGCTGCAGCTAAAGCCATATATCCGATCCCGGCATATACGACCCCAGTTAATGCAGTCCCACCAGATTATGATATGAATAATACAACTATTTTTGTTGGTAATTTGGATCTTAATGTCACAGAAGAGGAACTGAAGCAAACCTTCTTGCAATTTGGGGAAATTGTATCCGTTAAGATTCAGGCTGGCAAAGGATGTGGCTTTGTTCAATTTGGGACTAGAACGTCTGCTGAAGAAGCCATACAGAGGATGCAGGGAAAGATGATAGGTCAGCAAGTGGTCCGAATATCTTGGGGTAGGAGTTTGACAGCTAGACAGGTGGGCGCTGTTATCGTGAAAATGAAATCACAGATGGACCCAAGCCAATGGAGTGCCTACTATGGATATGGACAAGGCTATGAAGCCTACGCGTATGGGGCAGCTCAAGATCCTTCCTTGTACGCATATGGTGCATATGCTGGTTATACACAGTACCCCCAACAGGTTGAAGGTGCTCAGGACATGGCATCTATGACTATGCCTAATATTGAAACAAGGGAGGAGTTATACGATCCCCTGAGTGTGCCTGATGTTGACAAGCTGAATGCTGCATATTTATCAGTACATGGAAGTGCCATCTTAGGGCGGTCCCTCTGGCAGAAAACCTCGCCCTTCACACAGGCAGCTTAG 1275 0.462 MAMATTASQGYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAAAKAIYPIPAYTTPVNAVPPDYDMNNTTIFVGNLDLNVTEEELKQTFLQFGEIVSVKIQAGKGCGFVQFGTRTSAEEAIQRMQGKMIGQQVVRISWGRSLTARQVGAVIVKMKSQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYTQYPQQVEGAQDMASMTMPNIETREELYDPLSVPDVDKLNAAYLSVHGSAILGRSLWQKTSPFTQAA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0042 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 101 IPR000504 GO:0003723
Mibi01g0042 424 Gene3D - 20 100 IPR012677 -
Mibi01g0042 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 185 IPR000504 GO:0003723
Mibi01g0042 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Mibi01g0042 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 296 IPR000504 GO:0003723
Mibi01g0042 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 307 - -
Mibi01g0042 424 FunFam Polyadenylate-binding protein RBP47B 20 100 - -
Mibi01g0042 424 SUPERFAMILY RNA-binding domain, RBD 211 305 IPR035979 GO:0003676
Mibi01g0042 424 CDD RRM1_SECp43_like 22 102 - -
Mibi01g0042 424 SUPERFAMILY RNA-binding domain, RBD 12 89 IPR035979 GO:0003676
Mibi01g0042 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Mibi01g0042 424 Gene3D - 103 205 IPR012677 -
Mibi01g0042 424 Gene3D - 219 308 IPR012677 -
Mibi01g0042 424 CDD RRM3_NGR1_NAM8_like 230 301 - -
Mibi01g0042 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 303 IPR000504 GO:0003723
Mibi01g0042 424 SUPERFAMILY RNA-binding domain, RBD 107 202 IPR035979 GO:0003676
Mibi01g0042 424 SMART rrm1_1 22 97 IPR000504 GO:0003723
Mibi01g0042 424 SMART rrm1_1 115 189 IPR000504 GO:0003723
Mibi01g0042 424 SMART rrm1_1 232 299 IPR000504 GO:0003723
Mibi01g0042 424 FunFam Polyadenylate-binding protein RBP47B 102 204 - -
Mibi01g0042 424 CDD RRM2_SECp43_like 113 192 - -
Mibi01g0042 424 FunFam polyadenylate-binding protein RBP45 214 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0042 Mibi-ChrMibi01 670317 673701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0042 20 323 Eukaryotic Initiation Factors Gene Family AT2G23350 27.070 9.02e-25 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0042 01 670317 673701 Mibi01g0042 01 670317 673701 ECH