Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0040 ATGAAGCTCTCGGTGGTCTTCTATTTCGAGTCAATGAACCCTCAGTCTCAGAAGGCAACATCTGAAGTCAGTAGAATGCATGATCTTAAGATCCCTTTGCTGCAGACTCCACAAGATATCACGCTCCGGGAAGTGAAGTTTAGAATACAAGATATTACTTGTGCATCCTGCGTAAATTCAATAGAATCTGTAGTTGGAAACCTTGATGGAGTTAATTGTGTTATGGTGTCAGCAATTGATGGCAAAGCTACAATCAAGTATGTGTCAGAGCTCATTAGTGCCAAGAAAATAAAACAAACTGTAGAAGAAGCAGGTTTTAAAGTTCGTGATCTTTCAGAGCAAGACATATTGGCATGTAAAGTCAGAATTAAAGGAATGGCATGCACAAGCTGCTCTGAATCTGTTGAGTGTGCTCTTCAAATGGTCGATGGTGTGAAAAAAGCAGCAGTAGGCCTGGCTCTAGGAGAAGCAAAAGTGCATTTTGATCCTAATCTCACTGATGTAAACAAAATAATTGAAGCAATAGAAGATGCTGGCTTTGGGGTAGATCTCATTAGCTCGGGGACTGATATGAACAAAGTGCATCTAAGACTTGAAGGGCTTAATAGTCCAGAGGAAGTCAATGTTGTAATGTCATCTCTTGAATTAGCTGAAGGTGTAAATCATGTTGAGATGGACTTGACAGAACGTAAAGTTACAGTTACCTATGATCCAGATGTTACAGGTCCCAGGTCTATTATACAGTGCATTCAAACAGCTGCTCATGGCCCCAATGGATATCATGCGACCTTGTACTCTCCTTCAAGACAAAGAGAAACGGGGGGCATGCATGAAGTTCATATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCAGTTCCTGTGTTCTTATTCGCCATGGTACTTCCCATGCTTCCTCCGTATGGCAACTGGTTGAACTATAAGATCCACAATATGTTAACTATTGGAATGTTTCTAAGATGGATCCTTAGCACGCCTGTTCAGTTCATAGTTGGCAAAAGGTTCTATGTTGGATCATATCATGCACTGAGGCGAAGATCTGCTAACATGGATGTCCTAGTTGCACTTGGCACTAATGCTGCGTATTTTTACTCTATTTATATTCTAATAAAAGTGCTCACTTCATTAACATTTCAAGGACAAGATTTCTTTGAGACCAGTTCCATGTTAATATCCTTTATTCTCTTGGGAAAATATTTGGAGGTTGTGGCTAAAGGGAAAACGTCAGATGCTTTAGCAAAGCTGACACAACTTGTTCCTGATAAAGTTTGTTTATTAGCTTTAGATGCTGAGGGAAATGTCATCTCTGAGACAGAAGTTGACACTCAGCTTATACAAAGGAATGACATGATTAAAATTGTTCCTGGGGCCAAAATTCCTGTCGACGGTATTGTTGTAAAAGGTCAAAGTTATGTAAATGAAAGTATGATCACAGGTGAGGCAACACCTGTTGATAAAAGTCCGGGAGACAAGGTTATTGGTGGGACCGTGAATGAGAATGGCTGCTTACTGGTTAAGGCTACACATGTTGGAACAGAAACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTTCTAAAGCGCCCATTCAAAAACTTGCTGACCATATTTCAAAATTTTTTGTTCCAATTGTGGTTGTTGCGGCATTCATAACCTGGCTGGGATGGTTTATTCCTGGCAAAGCTGGCATTTACCCTAAGAATTGGATACCAAAAGCTATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCAGTTCTAGTTGTTGCCTGCCCATGTGCTCTGGGTCTAGCAACACCAACAGCAGTCATGGTTGCTTCAGGTATTGGTGCTTCTCAAGGGGTACTCATCAAGGGAGGAGACGCACTGGAAAAGGCACACAAGGTGAAGGTAGTTGTGTTTGATAAGACAGGGACACTTACCATTGGAAAACCAGAGGTAGTTAGTGCGGTGCTATTTTCTGAATTTTTTATGGAGGAGTTATGTGACATGGCCATTGCCGTTGAGGCAAGCAGCGAACACCCAATAGCAAAAGCTGTTGTGGTTTACGCAAAGAGGCAGCGCCAGCAGTTTGGGTCTAGTGCTGAGCAAGTCTTTGATGTGAAGGACTTTGAGGTGCACATGGGGGCTGGGGTAAGTGGAAAAGTTGGTGGGAGAACAATTTTGGTTGGGAACAAACGACTAATGCATTCTTGTAACGTTCCAATAAGTGCCGAAGTTGAAGGGTATGTTTCTGGAAACGAAGTTCTGGCTAGAACCTGCGTGTTGGTTTCAATTGACGGAAAGATAGCTGGAGCTTTCTCTGTAACTGATCCTGTAAAGCCCGGGGCTGAGCGTGTAATAACTTTTCTCCACTCCATGGGCATCTTAAGCATCATGGTGACCGGTGATAACTATGCCACTGCAACTGCAATCGCAAATGAAGTTGGTATTGACAAGGTCTTTGCTGAGACTGATCCGCTGGGAAAAGCAGATAAGGTTAAGGACTTACAGATGAAAGGAATGGTGGTGGCAATGGTGGGAGATGGAATCAATGACTCACCAGCTTTAGTTGCTGCGGACGTCGGGATGGCGATTGGTGCTGGAACTGACGTAGCCTTAGAAGCAGCAGATGTGGTTCTGGTGAAAAGCAGCTTGGAAGATGTAATAACAGCCATAGATCTGTCGAGAAGGACCATGTCCCGCATCCGTCTCAACTATATATGGGCTCTGGGTTACAACATTCTTGGCATGCCAATTGCTGCCGGCATCTTGTACCCCTTCACTGGAATCAGGCTGCCGCCGTGGCTTGCCGGTGCCTGCATGGCCGCTTCTTCTCTCAGTGTTGTTTCTTCCTCTCTGCTGCTGCAGCTCTACAAGAAACCTTTGCACGCGGCATCCACTTGA 2922 0.4346 MKLSVVFYFESMNPQSQKATSEVSRMHDLKIPLLQTPQDITLREVKFRIQDITCASCVNSIESVVGNLDGVNCVMVSAIDGKATIKYVSELISAKKIKQTVEEAGFKVRDLSEQDILACKVRIKGMACTSCSESVECALQMVDGVKKAAVGLALGEAKVHFDPNLTDVNKIIEAIEDAGFGVDLISSGTDMNKVHLRLEGLNSPEEVNVVMSSLELAEGVNHVEMDLTERKVTVTYDPDVTGPRSIIQCIQTAAHGPNGYHATLYSPSRQRETGGMHEVHMYRDQFLFSCLFSVPVFLFAMVLPMLPPYGNWLNYKIHNMLTIGMFLRWILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSIYILIKVLTSLTFQGQDFFETSSMLISFILLGKYLEVVAKGKTSDALAKLTQLVPDKVCLLALDAEGNVISETEVDTQLIQRNDMIKIVPGAKIPVDGIVVKGQSYVNESMITGEATPVDKSPGDKVIGGTVNENGCLLVKATHVGTETALSQIVQLVEAAQLSKAPIQKLADHISKFFVPIVVVAAFITWLGWFIPGKAGIYPKNWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTIGKPEVVSAVLFSEFFMEELCDMAIAVEASSEHPIAKAVVVYAKRQRQQFGSSAEQVFDVKDFEVHMGAGVSGKVGGRTILVGNKRLMHSCNVPISAEVEGYVSGNEVLARTCVLVSIDGKIAGAFSVTDPVKPGAERVITFLHSMGILSIMVTGDNYATATAIANEVGIDKVFAETDPLGKADKVKDLQMKGMVVAMVGDGINDSPALVAADVGMAIGAGTDVALEAADVVLVKSSLEDVITAIDLSRRTMSRIRLNYIWALGYNILGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQLYKKPLHAAST 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0040 973 ProSitePatterns E1-E2 ATPases phosphorylation site. 647 653 IPR018303 -
Mibi01g0040 973 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Mibi01g0040 973 PRINTS P-type cation-transporting ATPase superfamily signature 481 495 - -
Mibi01g0040 973 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Mibi01g0040 973 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Mibi01g0040 973 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Mibi01g0040 973 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
Mibi01g0040 973 PRINTS P-type cation-transporting ATPase superfamily signature 645 659 - -
Mibi01g0040 973 FunFam Copper-transporting ATPase HMA5 117 187 - -
Mibi01g0040 973 CDD HMA 46 109 IPR006121 GO:0046872
Mibi01g0040 973 FunFam ATPase copper transporting beta 41 114 - -
Mibi01g0040 973 FunFam Copper-transporting ATPase 1, putative 413 535 - -
Mibi01g0040 973 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 358 961 IPR027256 GO:0006812|GO:0016020|GO:0019829
Mibi01g0040 973 Gene3D - 188 267 - -
Mibi01g0040 973 Pfam E1-E2 ATPase 444 623 - -
Mibi01g0040 973 SFLD p-type atpase 627 904 IPR044492 -
Mibi01g0040 973 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 398 929 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g0040 973 ProSiteProfiles Heavy-metal-associated domain profile. 193 259 IPR006121 GO:0046872
Mibi01g0040 973 CDD P-type_ATPase_Cu-like 286 948 - -
Mibi01g0040 973 TIGRFAM TIGR00003: copper ion binding protein 45 108 IPR006122 GO:0005507
Mibi01g0040 973 TIGRFAM TIGR00003: copper ion binding protein 121 182 IPR006122 GO:0005507
Mibi01g0040 973 SUPERFAMILY Calcium ATPase, transduction domain A 446 531 IPR008250 -
Mibi01g0040 973 Pfam haloacid dehalogenase-like hydrolase 641 866 - -
Mibi01g0040 973 Gene3D - 413 535 - -
Mibi01g0040 973 SUPERFAMILY HMA, heavy metal-associated domain 188 265 IPR036163 GO:0046872
Mibi01g0040 973 CDD HMA 213 263 IPR006121 GO:0046872
Mibi01g0040 973 SUPERFAMILY HAD-like 643 958 IPR036412 -
Mibi01g0040 973 Gene3D - 40 115 - -
Mibi01g0040 973 CDD HMA 120 182 IPR006121 GO:0046872
Mibi01g0040 973 SUPERFAMILY Calcium ATPase, transmembrane domain M 390 918 IPR023298 -
Mibi01g0040 973 Pfam Heavy-metal-associated domain 197 251 IPR006121 GO:0046872
Mibi01g0040 973 Pfam Heavy-metal-associated domain 121 180 IPR006121 GO:0046872
Mibi01g0040 973 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Mibi01g0040 973 Gene3D - 656 785 IPR023299 GO:0000166
Mibi01g0040 973 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 37 968 - -
Mibi01g0040 973 FunFam Probable copper-transporting ATPase HMA5 756 909 - -
Mibi01g0040 973 ProSiteProfiles Heavy-metal-associated domain profile. 118 184 IPR006121 GO:0046872
Mibi01g0040 973 ProSitePatterns Heavy-metal-associated domain. 123 152 IPR017969 GO:0046872
Mibi01g0040 973 PRINTS H+-transporting ATPase (proton pump) signature 883 908 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g0040 973 PRINTS H+-transporting ATPase (proton pump) signature 852 868 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi01g0040 973 SUPERFAMILY HMA, heavy metal-associated domain 43 113 IPR036163 GO:0046872
Mibi01g0040 973 SUPERFAMILY HMA, heavy metal-associated domain 116 187 IPR036163 GO:0046872
Mibi01g0040 973 Gene3D - 636 902 IPR023214 -
Mibi01g0040 973 SFLD Haloacid Dehalogenase 627 904 - -
Mibi01g0040 973 Gene3D - 118 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0040 Mibi-ChrMibi01 653892 660473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0040 47 967 Primary Pumps ATPases AT1G63440 56.634 0.0 1060