Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0038 ATGACCGACCCCTCCCTCTCCAATGCCTTCCACTTTCCTTCCACCAATCAATATCATAGCTGGTCATATCCCACTTTACCCTCTCCTCCTCCTCCTCCAACAACAACAAGAGAAGCCCTACCTCTCCTTAACCTAAGCCCTCCAAGAGACTACTTCAAAGAAACAGAAGGAGACATGTCATGTACTTCTTTAAATCTGCAACTTCACCTTGGCCTTCCATCCACCTCATCGCCTCACTTACCTGATTCCTCAGACGCAGATGAAGTGACAACTGTTTCTTCTGGGTATCTCTCTGATAGGATCACTCCAGGGGGTCACTATTGGATCCCTACCCCTTCTCAGATTCTGATTGGCCCCACCCAGTTCTCCTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATATAGAAGAGGGGCAGAGTCGCTGAGGGGAATACAGCCAACGGCAATGCTGAGGCTGCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCGAGGGCAAAACCTCTGAAGGACTTCAGAACTCTTCAGACACATTACAAGAGGAAGCATGGGATGAAGCCTTTCATGTGCAGAAAATGTTGCAAGGCATTTGCAGTGAGGGGTGATTGGAGAACTCACGAGAAGAACTGTGGGAAGCTCTGGTATTGCTCCTGTGGCTCTGACTTCAAACATAAAAGATCTCTTAAAGATCATATCAAGGCTTTCGGACACCCCCACACCCCTTGTGATGATTCCCCCGATCATTCTCTCCATCATCAACAACTGACCTCTCAAATTGACCGCCCTAATCATCATTCCTTTCATTCTCATCTGTCATAG 873 0.4777 MTDPSLSNAFHFPSTNQYHSWSYPTLPSPPPPPTTTREALPLLNLSPPRDYFKETEGDMSCTSLNLQLHLGLPSTSSPHLPDSSDADEVTTVSSGYLSDRITPGGHYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRRGAESLRGIQPTAMLRLPCYCCAEGCKNNIEHPRAKPLKDFRTLQTHYKRKHGMKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHPHTPCDDSPDHSLHHQQLTSQIDRPNHHSFHSHLS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0038 290 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Mibi01g0038 290 SUPERFAMILY beta-beta-alpha zinc fingers 118 145 IPR036236 -
Mibi01g0038 290 MobiDBLite consensus disorder prediction 261 290 - -
Mibi01g0038 290 Gene3D Classic Zinc Finger 121 144 - -
Mibi01g0038 290 SUPERFAMILY beta-beta-alpha zinc fingers 188 226 IPR036236 -
Mibi01g0038 290 FunFam Zinc finger protein WIP2 175 257 - -
Mibi01g0038 290 PANTHER ZINC FINGER PROTEIN WIP2 15 273 IPR043584 GO:0003700|GO:0010468
Mibi01g0038 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Mibi01g0038 290 SMART c2h2final6 232 255 IPR013087 -
Mibi01g0038 290 SMART c2h2final6 169 201 IPR013087 -
Mibi01g0038 290 SMART c2h2final6 122 144 IPR013087 -
Mibi01g0038 290 SMART c2h2final6 206 226 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0038 Mibi-ChrMibi01 642030 643886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0038 17 260 C2H2 Transcription Factor Family AT1G51220 62.545 2.75e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi01g0038 None None None