Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0014 ATGCCTCTTCCGACTAAATCAATTAAGGCTGCTCAGGAAGGCGGCGGCACCATCAAGGATTTCGAAGATCTTGAGGCCCCTTCCAACAATCTATGGGTTGGCAATATATCGCACGAGGTTACCGAGTCCGATCTTATGGCTCTCTTCGCCCAATACGGCGCTCTTGATAGCGTCACGTCGTATTCCTCACGAAGTTATGGCTTCGTGTTTTTCAAGCGCGTCGAGGATGCCACGGCTGCCAAGAACGCGTTACAAGGCACTCTTCTTCGCGGAATTCCCATGAAGATCGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCACTGCTGTAACAAAGGAAGAATTGGAGGCTGAGTTTCGCAAATTTGGTAAGATTGAGGACTTTAAGTTTCTCAGAGACCGCAATACTGCATTTGTTGAATATTTCAATTTAGATGATGCAATTCATGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCACAATCGTCAAAAAAGGATATGCTGCTTGAGTATGGGCAGTTTCAGGGAAAAATCATAGGCCCACCTGATTTCTACTCCGGTCAGAAAAGACCACTGCAAACACAGGCTTCAGTTGGGAGGAAGGGAGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCCAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCCCGACGTGCCAAAGAGGGTCTTCAAGGTCGGCTTTTTAATGATCCTCGGATAACTATTATGTATTCAAGCAGTGAGTTGGCACCTGGTAAAGATTATCCTGGCATTTTCCCTGGAAGTAAAGGACCAAAATCTGACATGTTTGTGACTGAGCAAACATTTCGACCAGTACAAATGGATGTGTTTGGGCATAGTCGTCCAATGGTTCCAAATAATTTTCCCGGCCAGTTAGCACCTGGTGTCATTGTTGGACCAAATGTACCATTGAGATCTTTTGGTCCTCAAGGAAGTCTTGAACCTTTGCGTTCAAGCAGTGAATTTAATGAACTGGGCACAAACCAAAAGTTTCAGGATGGTAGCTCCAAAAGTCAAAGGGGTCCTAACTGGAAACGGCCATCTCCTCCGGCACCAGGGATGCTCCATTCTGCACCAGGTGTTAGACCTCCAACTAGATCCACATCTAGCTCATGGGACGTGCTGGAAATGAACCAGTTTCAGAGGGATTCTAAGCGTTCAAGGATAGAAGGTGCTTTACCTGTTGATGATGCCGCCTTTCCTTTAAGGAATGTTGATGATCGTGCAGTAGCGCTAGAGCAATCTTTTGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGTCTTACTCTGGTCCAGTAGGCACAAGGATTTCAGCTGGAGTACCTGCTACTGTTCAAGTTGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGACTGAGCTTCCAGAAGTTGTTGATTGCTCGGCCAGGACCGGATTGGATATGCTAACAAAACATTATGCAGATGCCGTTGGTTTTGACATTGTCTTCTTTCTACCAGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTCCGCTACCTTGGCGCAAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGAACGACTCTATTCTTGGTGCCGCCATCGGATTTCTTAACAAAGGTTTTAAAAGTGGCAGGGCCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGTACATCATTGCAACAGCCACTCCCTTTGTCTGTACCTTCAACTCAGTATATTGATAGGCAGCAGGTTCCTCCTCAAGTGGAATATGGTCAGATCCCTGTAAAAGAGGAAGAAATTTTGCCTGTGGATTATAATAGATTGTTGCATGATGAGTCTAAAGTTCCTTTAAACCCACTTTATCCTGCTACAAGTGGCGCCTCTCTAGTTCAGTCTGTACCCTTAGATTATAATTCTAGTAATAGTGCTGCAGTGACCCAATCGGGAGTTACATTAACACCTGAGCTTATTGCCACTCTAGCCTCTTTACTTCCTGGAACTCCACAATCATCTGTTGCTGATGGTGCTAAGTCAGCAGTAGGCTCCTCAATTATAAAAGCTCCATTTCCTCCAATTGTGCCCACTGACGGAAACCAATCGCATGTATGGAAACAGGACCATCAAATTGCAGATCCATCCAGTCATGTCCCTCAACAGGCAGGGAGTATATACTATCAACCTTATCCATTATCATCTACGTATGGCCACCCTGGTCAAGTGGCACCTGGCAGTTCAAATATCCAAGATTCTGCTGCCAGCTTACAGCATCAGGTTGCCATCTCGTCTAGACCCATGACTAACTTCTTGATGCCTTCTCAAAGCGGACAAGAATATGGAGTGGCGCAGAAAGGCTATGGAATGGCCCAGGGAATAGATGCCTCTGTTTTATATAGTTCTCAAGCTCTTCAGAACCCTAATATTTCTGTTTCCTCTTCCAATCAAGTTCATAGTTCTAACCCTTCTCAGCAACAAACTGCCATGCCATATTCAGTAGACAGAGTGAACTTAGAGCCTCCCAATCAGCAGTTTCAAGCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCTGAAGTGGAAGCGGATAAAAATCAGAGGTACCAGTCAACACTACAATTTGCTGCCAGTCTTCTCCTCCAAATACAGCAGCAACAGCAGCAGCAAACCCAAGGAGGGTGTGGGGCTGGAAATCAACAATGA 2949 0.451 MPLPTKSIKAAQEGGGTIKDFEDLEAPSNNLWVGNISHEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRVEDATAAKNALQGTLLRGIPMKIEFARPAKPCKQLWVGGISTAVTKEELEAEFRKFGKIEDFKFLRDRNTAFVEYFNLDDAIHAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLEYGQFQGKIIGPPDFYSGQKRPLQTQASVGRKGDGQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIFPGSKGPKSDMFVTEQTFRPVQMDVFGHSRPMVPNNFPGQLAPGVIVGPNVPLRSFGPQGSLEPLRSSSEFNELGTNQKFQDGSSKSQRGPNWKRPSPPAPGMLHSAPGVRPPTRSTSSSWDVLEMNQFQRDSKRSRIEGALPVDDAAFPLRNVDDRAVALEQSFGMEPVIDGGSGPFVNIQGKSYSGPVGTRISAGVPATVQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAVGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPLSVPSTQYIDRQQVPPQVEYGQIPVKEEEILPVDYNRLLHDESKVPLNPLYPATSGASLVQSVPLDYNSSNSAAVTQSGVTLTPELIATLASLLPGTPQSSVADGAKSAVGSSIIKAPFPPIVPTDGNQSHVWKQDHQIADPSSHVPQQAGSIYYQPYPLSSTYGHPGQVAPGSSNIQDSAASLQHQVAISSRPMTNFLMPSQSGQEYGVAQKGYGMAQGIDASVLYSSQALQNPNISVSSSNQVHSSNPSQQQTAMPYSVDRVNLEPPNQQFQAALQGASQGTSSEVEADKNQRYQSTLQFAASLLLQIQQQQQQQTQGGCGAGNQQ 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0014 982 MobiDBLite consensus disorder prediction 385 430 - -
Mibi01g0014 982 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Mibi01g0014 982 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Mibi01g0014 982 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Mibi01g0014 982 SUPERFAMILY RNA-binding domain, RBD 23 103 IPR035979 GO:0003676
Mibi01g0014 982 MobiDBLite consensus disorder prediction 892 911 - -
Mibi01g0014 982 CDD RRM3_Spen 228 297 - -
Mibi01g0014 982 FunFam Flowering time control protein FPA 21 103 - -
Mibi01g0014 982 CDD RRM3_Spen 108 177 - -
Mibi01g0014 982 Pfam SPOC domain 516 631 IPR012921 -
Mibi01g0014 982 SUPERFAMILY RNA-binding domain, RBD 216 299 IPR035979 GO:0003676
Mibi01g0014 982 Gene3D - 17 103 IPR012677 -
Mibi01g0014 982 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
Mibi01g0014 982 FunFam flowering time control protein FPA 219 312 - -
Mibi01g0014 982 SUPERFAMILY RNA-binding domain, RBD 103 186 IPR035979 GO:0003676
Mibi01g0014 982 MobiDBLite consensus disorder prediction 385 402 - -
Mibi01g0014 982 Gene3D - 104 188 IPR012677 -
Mibi01g0014 982 Gene3D - 213 303 IPR012677 -
Mibi01g0014 982 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Mibi01g0014 982 CDD RRM3_Spen 31 100 - -
Mibi01g0014 982 SMART rrm1_1 107 174 IPR000504 GO:0003723
Mibi01g0014 982 SMART rrm1_1 30 97 IPR000504 GO:0003723
Mibi01g0014 982 SMART rrm1_1 227 295 IPR000504 GO:0003723
Mibi01g0014 982 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Mibi01g0014 982 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0014 Mibi-ChrMibi01 257292 264165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g0014 11 289 Eukaryotic Initiation Factors Gene Family AT4G34110 24.671 1.24e-12 70.1