Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g03062 ATGACTGCTGTTGGTTCATCACACGAGACTTCAGCAGCACCTGCAAGTTTGCCTTCTGTTCAGAATGGTATTCCAATGCTTGTAATTTTGCAGTCTGGTGGTTCATCACACGAGACTTCAGCAGCGCCTGCAAGGTTGCCTTCTGCGCAGAATGGTATGCCAATGCTTCTAATATTGCCGGCTGTTGGTTCATCACACCAGACTTCGGCAGCGCCTGCAAGTTTGCCTTCGGAGCGTAATAGTTCCTGGCAACTTCAAATTTATGGCAATCAGACTACAATAATGTTGCCTAACCAAACCAAAGTCAGCAAAGCTTTCAGATGTGAAGTGTGTGAAATTGATGTCAATAGCCAAGTCTCTTTTGAAAAGCACATAGCTGGAAAGAAACACAAGAAGAATTTGCAGCGGCAGACTAATCCTACAATTGCATCTCATGCGAATGTACAAACTGACACAAGTAGTATCCAAGGTCAAGCGTTAATTGGTCCTGTACCCGAGCAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGAAGTATCCAAGGACAAGCGTTAATTGATGCTGTACCCAAACAATCAGAGCCTAAGAAACAGATTGATTTTGTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATCGGTCCTGTAGCCGAACAATCACAGCCTAAGAAACAGGTTGATTCTGTCAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATCGGTCCTGTAGCCGAACAATCACAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACAAAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTCAAGAATGTACAAACTGACAAAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAACTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGGTTTGCTCAACATGCAATGTCGTGTGTGTTGGTCAAGATACATATAACAAACATGTTGCTGGGAGAAAGCATGCTGCTAAAGTGAATTTACATTATCCTTTTGTTGCCTTGAAGTCTAATGATGGCATTGGTCCACCTATTTCCGAACTCAAGCGTAACGGTGATGCTCTAATTGAAAAAGCTGCTAAGAAAATCAAGGTTGCTGAATCTGTATGGTGTGAATTTTGCAAGATTAATTGTAACAGCAGGTATAGCTACACTGCACACTTGTCCGGTAAGAAACACTTGAAGAACATGGAGAAACTATCAAATCCAAAAGTTGGTGTTGGCAGCGGTGCCACTACCACTACCACCACCACCACCGCAATAGGTACTTCAATTGGGTCACAGGAAAAGCCAGATTCAGATAAACCAAAAACAAAGGAGGTATCAGTACTTGATATTGAGACAGAGAAACGTAAAGCTGTGGAAAGAGGAGCTGCAGTTGATGATATTAAAATGTGCACTTTATGCAATGTGGTGTGTAATAGCCAGGCAAATTTAAATACTCACCTTAGTGACCATACTCACGCTGCTATGGTGAGGAAGGCAGGGTTAATCACTGGTTGA 1719 0.4188 MTAVGSSHETSAAPASLPSVQNGIPMLVILQSGGSSHETSAAPARLPSAQNGMPMLLILPAVGSSHQTSAAPASLPSERNSSWQLQIYGNQTTIMLPNQTKVSKAFRCEVCEIDVNSQVSFEKHIAGKKHKKNLQRQTNPTIASHANVQTDTSSIQGQALIGPVPEQSEPKKQVDSVKNVQTDTRSIQGQALIDAVPKQSEPKKQIDFVKNVQTDTSSIQGQALIGPVAEQSQPKKQVDSVKNVQTDTSSIQGQALIGPVAEQSQPKKQVDSVKNVQTDKSSIQGQALIGPVAEQSEPKKQVDSVKNVQTDKSSIQGQALIGPVAEQSEPKKQVDSVKNVQTDTTSIQGQALIGPVAEQSEPKKQVDSVKVCSTCNVVCVGQDTYNKHVAGRKHAAKVNLHYPFVALKSNDGIGPPISELKRNGDALIEKAAKKIKVAESVWCEFCKINCNSRYSYTAHLSGKKHLKNMEKLSNPKVGVGSGATTTTTTTTAIGTSIGSQEKPDSDKPKTKEVSVLDIETEKRKAVERGAAVDDIKMCTLCNVVCNSQANLNTHLSDHTHAAMVRKAGLITG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g03062 572 SMART ZnF_U1_5 367 401 IPR003604 GO:0003676|GO:0008270
Mepo7g03062 572 SMART ZnF_U1_5 438 472 IPR003604 GO:0003676|GO:0008270
Mepo7g03062 572 SMART ZnF_U1_5 103 137 IPR003604 GO:0003676|GO:0008270
Mepo7g03062 572 SMART ZnF_U1_5 533 567 IPR003604 GO:0003676|GO:0008270
Mepo7g03062 572 ProSiteProfiles Zinc finger matrin-type profile. 106 136 IPR000690 GO:0003676|GO:0005634|GO:0008270
Mepo7g03062 572 SUPERFAMILY beta-beta-alpha zinc fingers 88 137 IPR036236 -
Mepo7g03062 572 ProSitePatterns Zinc finger C2H2 type domain signature. 538 560 IPR013087 -
Mepo7g03062 572 PANTHER ZINC FINGER RNA-BINDING PROTEIN 53 184 - -
Mepo7g03062 572 SMART c2h2final6 441 465 IPR013087 -
Mepo7g03062 572 SMART c2h2final6 106 130 IPR013087 -
Mepo7g03062 572 SMART c2h2final6 536 558 IPR013087 -
Mepo7g03062 572 SMART c2h2final6 370 394 IPR013087 -
Mepo7g03062 572 SUPERFAMILY beta-beta-alpha zinc fingers 531 566 IPR036236 -
Mepo7g03062 572 Pfam Zinc-finger of C2H2 type 106 130 - -
Mepo7g03062 572 Pfam Zinc-finger of C2H2 type 538 555 - -
Mepo7g03062 572 Pfam Zinc-finger of C2H2 type 442 465 - -
Mepo7g03062 572 Pfam Zinc-finger of C2H2 type 371 394 - -
Mepo7g03062 572 SUPERFAMILY beta-beta-alpha zinc fingers 439 472 IPR036236 -
Mepo7g03062 572 SUPERFAMILY beta-beta-alpha zinc fingers 352 401 IPR036236 -
Mepo7g03062 572 Gene3D Classic Zinc Finger 356 401 - -
Mepo7g03062 572 Gene3D Classic Zinc Finger 91 138 - -
Mepo7g03062 572 Gene3D Classic Zinc Finger 516 567 - -
Mepo7g03062 572 Gene3D Classic Zinc Finger 429 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g03062 Mepo-Chr7 41478859 41482392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g03062 323 564 C2H2 Transcription Factor Family AT5G61190 24.206 2.02e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo7g03062 zf-met 4.9e-07 CL0361