Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g03049 ATGGATTCTGATGATATGCACGATGCCAACGATGTTGAATCCCTCCATGACGATTTCTACGGTGGTGAAACCGAAGATGCTCCCACTGATGACTACAGCGACGACTACAATGATGATGATGATGGCGATGATGATGATGATGCTGATAATGATTACTTTCATGATGGCGCTGATGATTCTGACCTTGCTCCTGAGATAAATTTTGCCATATTTAAAGAATCAGATATCCGGGAACGGCAGGAAGATGATATCAGTAGGGTCGCAGCAGTTCTTTCCATAGCACCAGTTGCTGCAAGCATCCTACTTCGTCATTATAATTGGAATGTCAGTAATGTTAACGAAGCTTGGTTTGCTGACGAAGATAGAGTCCGAAGAAAAGTTGGCTTGTTGAGGAAACCAGTTTATGAGAATCCTGATGCTAAAGAGCTTACTTGCGGCATCTGTTTCGAAGATTATCGTCCTTCTAAGATTCACACTGCTTCTTGCGGTCATCCGTACTGTTTTTCATGCTGGGGAGGATATATTGGAACTTCAATTAACGATGGTCCAGGATGCTTGATGCTGAGATGTCCTGATCCTGCATGTGGTGCTGCTGTTAATCAAGATATGATTAATCTTTTAGCATCTGCTGAAGATAAAGAGAAGTATGACCGTTACCTTATTAGATCTTACGTTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGTTGCTGGTGGTGAAAATTATGACGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCGCTGAAGAGGCTCACCGTCCAGTGGATTGTGGCACAGTGTCGAAGTGGATTTTGAAAAACAGTTCAGAATCCGAAAACACAAACTGGATACTTGCTAACTCGAAGCCGTGCCCCAAGTGCAAGAGACCGATTGAAAAAAACCTAGGGTGCATGCATATGACATGTACTCCACCTTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTAGAAGGACTGGTGGTTACAACGCTTGCAATCGTTATGAAAACTCTAAAATAAAGGGGGATTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTATACACATTATTATGAGCGGTGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACACCAGATGCAAACGGTTCATATGGAGAAGCTTCGTGACACACAGTGCCAAGCTGAAGCAGAGCTTAAGTTCATAACCGAGGCTTGGTTACAAATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTATCAGAGCATGAGCATGCTAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCAGAATCAAGTTTGGAGAGACTTCATCAATGCGCGGAAAAGGAACTCCATGTATTCGTCAGTACTGAAGGCCCGTCTAAAGAATTCAAGGATTTTCGCTCAAAACTAGCTGGGTTGACCAGTGTGACTAAAAACTTCTTCAAGAATTTGGTTAGTGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGGAGCTGCTACAAGCAAAGCAACGAGTTAA 1620 0.4228 MDSDDMHDANDVESLHDDFYGGETEDAPTDDYSDDYNDDDDGDDDDDADNDYFHDGADDSDLAPEINFAIFKESDIRERQEDDISRVAAVLSIAPVAASILLRHYNWNVSNVNEAWFADEDRVRRKVGLLRKPVYENPDAKELTCGICFEDYRPSKIHTASCGHPYCFSCWGGYIGTSINDGPGCLMLRCPDPACGAAVNQDMINLLASAEDKEKYDRYLIRSYVEDNKKTKWCPAPGCEHAVNFVAGGENYDVSCLCSYSFCWNCAEEAHRPVDCGTVSKWILKNSSESENTNWILANSKPCPKCKRPIEKNLGCMHMTCTPPCKFEFCWLCLGAWSDHGRRTGGYNACNRYENSKIKGDYDETEKRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHMEKLRDTQCQAEAELKFITEAWLQIVECRRVLKWTYAYGYYLSEHEHAKKQFFEYLQGEAESSLERLHQCAEKELHVFVSTEGPSKEFKDFRSKLAGLTSVTKNFFKNLVSALENGLCDVDSNGAATSKATS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g03049 539 CDD Rcat_RBR_ARI7-like 299 353 - -
Mepo7g03049 539 ProSiteProfiles TRIAD supradomain profile. 141 354 IPR044066 -
Mepo7g03049 539 SUPERFAMILY RING/U-box 295 346 - -
Mepo7g03049 539 Pfam Ariadne domain 363 525 IPR045840 -
Mepo7g03049 539 SMART ibrneu5 214 276 IPR002867 GO:0008270
Mepo7g03049 539 SMART ibrneu5 289 350 IPR002867 GO:0008270
Mepo7g03049 539 Gene3D - 272 527 - -
Mepo7g03049 539 MobiDBLite consensus disorder prediction 24 54 - -
Mepo7g03049 539 SUPERFAMILY RING/U-box 140 223 - -
Mepo7g03049 539 Pfam IBR domain, a half RING-finger domain 214 276 IPR002867 GO:0008270
Mepo7g03049 539 Pfam IBR domain, a half RING-finger domain 298 340 IPR002867 GO:0008270
Mepo7g03049 539 FunFam RBR-type E3 ubiquitin transferase 139 228 - -
Mepo7g03049 539 CDD BRcat_RBR_ANKIB1 221 285 - -
Mepo7g03049 539 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Mepo7g03049 539 MobiDBLite consensus disorder prediction 1 23 - -
Mepo7g03049 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 226 IPR013083 -
Mepo7g03049 539 MobiDBLite consensus disorder prediction 1 60 - -
Mepo7g03049 539 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 75 442 IPR031127 GO:0004842|GO:0016567
Mepo7g03049 539 FunFam RBR-type E3 ubiquitin transferase 277 527 - -
Mepo7g03049 539 SUPERFAMILY RING/U-box 214 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g03049 Mepo-Chr7 41356744 41358644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g03049 17 539 ARIADNE family AT1G65430 67.864 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g03049 K11968 - gmx:100810427 912.138