Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g03047 ATGCAATCAGATAGTGGCAAGCTATTTATCGGTGGAATATCGTGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGAGAGGTTAAGGAAGCGGTGATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGCTTCGTTGTTTTCATTGATCCAGCTGTTGCAGATATTGTCGTGCAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTAGGGACGATCAGAACGTATTGAGTAGAACCAGTGGCAGCATCCATGGCTCTCCTGGTCCAGGTCGCACTCGAAAGATATTTGTTGGAGGTTTGGCTTCTACTGTGACAGAGAGTGACTTCAAGAAGTACTTTGACCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACATATGATTCTGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTAAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCCCCAGGACCTACCCGCTCTCCTCTCAGTGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAATCAGGGTTATAGTCCAAGTACTGTCGGTGGCTATGGACTTCGGGTGGATGGTCGGTTCAGTCCGGTTGCTGGAGGCCGAAATGCATTTGCACCATTTGGATCTGGTTATGGAATGGGTATGAATTTCGAGCCTGGTCTGAGTCCTGGTTTTGGAGGGAATGCAAATTTCAATGGCAATCTTAGCTATGGACGGGGCTTAAATCCTTACTTCATCGGCGGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAACGGAGGAAGCAATTCTTTCTTCAGTTCAGTGACTCGAAACTTATGGGGGAACGGAAGCCTCAACTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCAGGAAGTGGGAATGTTGGAGGAAATGCATTTGGCAATTCTGGAGTCAACTGGAGTTCTTCGCCGATTTCTGGACATGGTGGCGGGAACAATGTGTCACAGGGTAGTGGCAATCTTGGATATGGAGGTGGCAACAACGGTTATGGATTGGGGACTGAAGGGTATGGAAGAAGCAGTGGTTCTACTCTCGCACCAACATCTTCATACTCTACATCAAATGGTGGTGGTGTAGATGGGGCTTTTGCTGATTTTTACAACAACAATTCGGTCTATGGGGACACCACTTGGCGATCTTCAAATTCGGAGAGAGATGGATCTGGTCCCTTCGGTTACGGACTTGGTGGTGCACCTTCGGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTACTACATAG 1440 0.459 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFNQGYSPSTVGGYGLRVDGRFSPVAGGRNAFAPFGSGYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNSGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRGITT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g03047 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Mepo7g03047 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mepo7g03047 479 Gene3D - 4 88 IPR012677 -
Mepo7g03047 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mepo7g03047 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mepo7g03047 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mepo7g03047 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Mepo7g03047 479 CDD RRM2_Hrp1p 107 184 - -
Mepo7g03047 479 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Mepo7g03047 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Mepo7g03047 479 MobiDBLite consensus disorder prediction 81 101 - -
Mepo7g03047 479 MobiDBLite consensus disorder prediction 430 479 - -
Mepo7g03047 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Mepo7g03047 479 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Mepo7g03047 479 Gene3D - 103 189 IPR012677 -
Mepo7g03047 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Mepo7g03047 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g03047 Mepo-Chr7 41325322 41330514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g03047 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 28.525 2.46e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g03047 K14411 - gmx:100795907 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo7g03047 7 41325322 41330514 Mepo7g03047 7 41325322 41330514 ECH
Mepo3g06061 3 74916079 74919549 Mepo7g03047 7 41325322 41330514 PCT