Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo7g02900 ATGGAAGACAAGGAAACGGTGAAGACGACGGTTCCAAACACACAACTCACCAATGTTGTCGTTTCCGGCGGGAAACAATATTCTTCTCCCAATGACTTGGAGACCTTCTATATCAAACTCACTCGACTTTTGGACTTAGCTGGATCCACTCTCATTTTCAATGTCCGAGAAACATCCCTAGACGTGTACCTCTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTGGCCAAGAAAAGAAATGGGGTGAAGTTGTTTCTGCACTAAAACTGGAAGGAAACAATGCAACCTTATGTGCTCAAGTTGAAAATCTCTATGGTTATCTTCTTTACGAATTTGAGAAATTGTACTTCTACAGGTCTCCTGCAGCCACCAACACAAAAGTTAAAAGGAAGCGGAACTCATGCCCTAGTTTATCTCAATTGACGGACGATGAAGATTATCCGATGGCAGCAAAGATATCCAAGGACTACTCTAGTCAAATTACAGGAGATGGATATCAAGAATCTCAAGTGTTTCAACAAGCACCCTCGAGTAACAAAGAAAAGAAGAAACGGAGAGGTCCTCCAAGGAACCAAAGTGGTTACCAAATATTCCTCAAGAAGGAATGTGCTCGACTGAAAGCTGATCATCAGGACATACGCGTCCAAAAACAAATGGCTATTGATGCTTGGAAGAAGATGTCAGACATTGATAAAAAGCCATATGTAGAGGAAAGCAAGAAAATAAAGGAAAAAAACAAAGAAGCAATGATCATTGACAGTGAACAGAAGTGCACTCAAGATCTTAAGAGGGATGAAAAGAAGCATAATGGTTTTCTCTTCCGTCATTGCAAAGCTCGTGTGCCTTCTCTTCCATTCGATCCCTTCTCAGATCCAACTCCAATTCTTCGATTTTTCTCCCCTTTCGTTGAATCCATTTTTGTCGCAGTTCAAGGAAACAAGTCAAATGGGTTTACGTATCAGTGGGACAAAGGCCGACCTTGGTCGAATGCCGTCAAATACATCTTCTGTGGCTCTGATTTGCCGGTCGGAAAGGAAGTTCTAACACTTTGCAAGGAAACGCATGTTCGCAGATTAGGTCACTCACTCTATCTTTTACTTTCATCAATGTATGTGATGTTGAGAGTTCTGGTGATTGTTCAGAAGCTTTTACAAGAGAACAAACATAGTTCAAAAAGAGACATTTATTACATGCATCCATCTGTCTTTTTGGGTGAGTCATCAGAATTTCGCAACATGATGGATCATATGGATAGTTTCTGCCGGGAATGGGCCCACCCTATTCCTGTTTATGTTGAAGAAATTAAAGATATCGTAAGCGCGGCTCGTTACATATTAGTTGTCGAGAAAGAATCAGGCAAGCAAATGCTGTTTTTGCGGCTTCTTGTTGAGAATTTGCACATACCTGCTTATTGCCTTGTAGATTGTGATCCCTATGGATTTGATATCTTGACCACTTATAGATTTGGCTCAATGCAAATGGCTTATGACACGAAACATCTTCGTGTCCCCGAGATACACTGGCTTGGAGCTTTTCCTTCAGATTCTGAGAGATACTTTGTTCCAAAACAGTGCCTCCTTCCTTTGACTGCTGAAGACAAGAGAAAAATTGAAGCCATGTTGCTTAGGTGCTACCTGCAAAGGGAGGTGCCACAATGGAGGTTGGAGCTCAAAATGATGTTGCAGAAAGGAGTGAAGTTTGAGATTGAAGCGCTATCTGTTCATACACTTTCATTCTTGACAGAGTCTTATATACCATCCAAAATTCATTTTAAAGTTCAAATCTAG 1797 0.4112 MEDKETVKTTVPNTQLTNVVVSGGKQYSSPNDLETFYIKLTRLLDLAGSTLIFNVRETSLDVYLFYLEVTKRGGYHQVGQEKKWGEVVSALKLEGNNATLCAQVENLYGYLLYEFEKLYFYRSPAATNTKVKRKRNSCPSLSQLTDDEDYPMAAKISKDYSSQITGDGYQESQVFQQAPSSNKEKKKRRGPPRNQSGYQIFLKKECARLKADHQDIRVQKQMAIDAWKKMSDIDKKPYVEESKKIKEKNKEAMIIDSEQKCTQDLKRDEKKHNGFLFRHCKARVPSLPFDPFSDPTPILRFFSPFVESIFVAVQGNKSNGFTYQWDKGRPWSNAVKYIFCGSDLPVGKEVLTLCKETHVRRLGHSLYLLLSSMYVMLRVLVIVQKLLQENKHSSKRDIYYMHPSVFLGESSEFRNMMDHMDSFCREWAHPIPVYVEEIKDIVSAARYILVVEKESGKQMLFLRLLVENLHIPAYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIHWLGAFPSDSERYFVPKQCLLPLTAEDKRKIEAMLLRCYLQREVPQWRLELKMMLQKGVKFEIEALSVHTLSFLTESYIPSKIHFKVQI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo7g02900 598 Gene3D - 458 595 - -
Mepo7g02900 598 SUPERFAMILY HMG-box 180 253 IPR036910 -
Mepo7g02900 598 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 372 418 IPR002815 GO:0003677|GO:0003918|GO:0005694
Mepo7g02900 598 SMART bright_3 31 121 IPR001606 GO:0003677
Mepo7g02900 598 Pfam Type IIB DNA topoisomerase 374 419 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Mepo7g02900 598 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 191 253 IPR009071 -
Mepo7g02900 598 Pfam HMG (high mobility group) box 191 253 IPR009071 -
Mepo7g02900 598 SMART hmgende2 190 258 IPR009071 -
Mepo7g02900 598 SUPERFAMILY DNA topoisomerase IV, alpha subunit 373 592 IPR036078 GO:0003677|GO:0005694
Mepo7g02900 598 PRINTS SPO11 homologue signature 518 542 IPR013048 GO:0003677|GO:0003918|GO:0042138
Mepo7g02900 598 PRINTS SPO11 homologue signature 483 502 IPR013048 GO:0003677|GO:0003918|GO:0042138
Mepo7g02900 598 PRINTS SPO11 homologue signature 579 598 IPR013048 GO:0003677|GO:0003918|GO:0042138
Mepo7g02900 598 SUPERFAMILY ARID-like 27 122 IPR036431 GO:0003677
Mepo7g02900 598 ProSiteProfiles ARID domain profile. 30 120 IPR001606 GO:0003677
Mepo7g02900 598 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Mepo7g02900 598 SMART ARID_2 27 116 - -
Mepo7g02900 598 Gene3D - 348 423 IPR036388 -
Mepo7g02900 598 CDD ARID 34 116 - -
Mepo7g02900 598 Gene3D High mobility group box domain 175 254 IPR036910 -
Mepo7g02900 598 Gene3D - 20 137 IPR036431 GO:0003677
Mepo7g02900 598 CDD TOPRIM_TopoIIB_SPO 446 582 IPR034136 -
Mepo7g02900 598 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo7g02900 Mepo-Chr7 39984370 39996598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo7g02900 36 254 ARID Transcription Factor Family AT3G13350 23.372 3.14e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo7g02900 ARID 3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo7g02900 K10878 - mtr:11425999 442.965